Wall clock time and date at job start Mon Mar 30 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46984 * 2 1 4 4 C 1.52994 * 109.46855 * 119.99863 * 2 1 3 5 5 C 1.50700 * 109.46972 * 185.07832 * 4 2 1 6 6 H 1.08007 * 120.00006 * 3.05105 * 5 4 2 7 7 C 1.37872 * 120.00195 * 183.33679 * 5 4 2 8 8 N 1.31513 * 120.00015 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47419 * 59.99821 * 9 7 5 11 11 H 1.48504 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99378 * 9 7 5 13 13 N 1.46895 * 109.46928 * 239.99857 * 2 1 3 14 14 C 1.48754 * 111.00519 * 300.13009 * 13 2 1 15 15 C 1.55125 * 101.66701 * 157.59336 * 14 13 2 16 16 H 1.09000 * 110.79960 * 82.92887 * 15 14 13 17 17 O 1.42900 * 110.96339 * 206.33503 * 15 14 13 18 18 C 1.54420 * 102.52744 * 324.66726 * 15 14 13 19 19 O 1.43490 * 106.59367 * 21.25885 * 18 15 14 20 20 H 1.09001 * 109.47474 * 186.84524 * 1 2 3 21 21 H 1.09001 * 109.47488 * 306.84422 * 1 2 3 22 22 H 1.09003 * 109.47137 * 66.84661 * 1 2 3 23 23 H 1.08994 * 109.47176 * 65.07804 * 4 2 1 24 24 H 1.08999 * 109.47416 * 305.07239 * 4 2 1 25 25 H 0.97005 * 120.00148 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.99111 * 275.69213 * 14 13 2 27 27 H 1.08999 * 110.98422 * 39.49541 * 14 13 2 28 28 H 0.96696 * 114.00222 * 174.65556 * 17 15 14 29 29 H 1.08999 * 110.03215 * 261.97720 * 18 15 14 30 30 H 1.09002 * 110.03567 * 140.54081 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5417 -0.6132 1.3137 6 1 4.0745 -0.0417 0.5681 7 6 4.2359 -1.2489 2.3211 8 7 3.5876 -1.9491 3.2261 9 14 6.0975 -1.1156 2.4006 10 1 6.4861 0.3107 2.5419 11 1 6.5992 -1.8829 3.5689 12 1 6.6870 -1.6684 1.1548 13 7 2.0196 -0.6925 -1.1994 14 6 1.5401 -2.1002 -1.2354 15 6 1.6421 -2.4277 -2.7483 16 1 2.6581 -2.7199 -3.0134 17 8 0.7111 -3.4481 -3.1143 18 6 1.2686 -1.0825 -3.4081 19 8 1.4943 -0.0654 -2.4214 20 1 -0.3634 -1.0203 0.1225 21 1 -0.3634 0.6162 0.8224 22 1 -0.3633 0.4041 -0.9449 23 1 1.7528 -1.7717 1.2049 24 1 1.6043 -0.2625 2.1369 25 1 4.0760 -2.3961 3.9351 26 1 2.1915 -2.7496 -0.6506 27 1 0.5089 -2.1703 -0.8893 28 1 0.6796 -3.6298 -4.0635 29 1 0.2193 -1.0900 -3.7033 30 1 1.9005 -0.9052 -4.2784 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695886363.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:31 Heat of formation + Delta-G solvation = -71.441165 kcal Electronic energy + Delta-G solvation = -13580.892686 eV Core-core repulsion = 11184.156223 eV Total energy + Delta-G solvation = -2396.736463 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.39677 -37.62260 -36.26919 -34.40340 -31.79155 -29.94258 -29.15508 -25.69731 -24.78984 -22.85123 -20.85040 -18.53535 -18.42162 -17.58503 -16.95083 -16.49545 -16.16939 -15.26387 -14.79804 -14.57786 -14.12453 -13.84639 -13.78877 -13.54559 -13.17901 -12.88325 -12.65210 -12.38983 -12.32212 -11.99404 -11.36441 -11.31578 -11.09620 -11.05026 -10.52794 -9.50933 -8.14931 -6.22289 1.43143 1.45382 1.53332 1.94400 2.45512 2.89803 3.19409 3.52850 3.58607 3.94376 4.10393 4.17116 4.34179 4.42905 4.48789 4.64920 4.70127 4.89441 4.91612 5.02702 5.17549 5.27538 5.55534 5.75057 5.86977 5.97205 6.29707 6.79361 6.89913 7.44917 8.96400 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.039342 B = 0.009989 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.533486 B = 2802.394041 C = 2999.375723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.062 3.938 3 H 0.076 0.924 4 C 0.039 3.961 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.959 3.041 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.302 5.302 14 C -0.002 4.002 15 C 0.094 3.906 16 H 0.092 0.908 17 O -0.567 6.567 18 C 0.009 3.991 19 O -0.280 6.280 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.005 0.995 24 H 0.008 0.992 25 H 0.262 0.738 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.404 0.596 29 H 0.083 0.917 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -0.782 -12.673 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.047 4.047 3 H 0.094 0.906 4 C 0.001 3.999 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.071 5.071 14 C -0.130 4.130 15 C 0.033 3.967 16 H 0.110 0.890 17 O -0.376 6.376 18 C -0.069 4.069 19 O -0.283 6.283 20 H 0.070 0.930 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.255 0.745 29 H 0.101 0.899 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.048 -0.599 -11.946 12.627 hybrid contribution 0.065 -0.269 -0.005 0.277 sum -3.983 -0.868 -11.950 12.626 Atomic orbital electron populations 1.22256 0.95860 1.01854 1.02540 1.22261 0.93823 0.99007 0.89601 0.90622 1.19065 0.95677 0.94599 0.90539 1.21452 0.92887 1.30788 1.10536 0.92372 1.25838 1.03191 0.95077 0.95393 1.70070 1.37422 1.34281 1.15725 0.85595 0.80098 0.78380 0.77527 1.19511 1.21059 1.19457 1.71766 1.42384 0.99412 0.93566 1.23854 1.01158 0.91118 0.96895 1.23179 0.93731 0.87414 0.92369 0.89048 1.86481 1.62608 1.56740 1.31767 1.24143 1.02231 0.88071 0.92446 1.91370 1.88283 1.28563 1.20077 0.92976 0.91168 0.91807 0.97625 0.97417 0.92937 0.88693 0.91763 0.74485 0.89858 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.05 8.65 71.98 0.62 -5.43 16 2 C 0.06 2.70 2.71 44.91 0.12 2.82 16 3 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 4 C 0.04 2.02 4.32 29.85 0.13 2.15 16 5 C -0.52 -29.37 8.84 25.60 0.23 -29.15 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C 0.00 0.13 5.46 84.65 0.46 0.59 16 8 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 N -0.30 -12.49 5.65 -483.29 -2.73 -15.22 16 14 C 0.00 -0.06 5.19 86.67 0.45 0.39 16 15 C 0.09 2.61 4.46 31.80 0.14 2.75 16 16 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 17 O -0.57 -13.48 13.41 -148.98 -2.00 -15.47 16 18 C 0.01 0.24 7.70 72.46 0.56 0.80 16 19 O -0.28 -10.19 10.88 -52.16 -0.57 -10.76 16 20 H 0.05 1.88 6.39 -2.39 -0.02 1.86 16 21 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.06 2.15 7.36 -2.39 -0.02 2.13 16 23 H 0.01 0.30 6.75 -2.39 -0.02 0.28 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 26 H 0.09 4.00 7.69 -2.39 -0.02 3.98 16 27 H 0.06 2.43 5.82 -2.39 -0.01 2.42 16 28 H 0.40 4.85 9.11 -74.06 -0.67 4.18 16 29 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -66.52 249.34 0.18 -66.34 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.46 Total: 9.32 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 2.71 Total: -25.07 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -2.45 Total: -71.20 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -2.56 Total: -26.24 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.52 0.18 -66.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886363.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.104 kcal (2) G-P(sol) polarization free energy of solvation -66.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds