Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47329 * 2 1 4 4 C 1.52998 * 109.47426 * 120.00267 * 2 1 3 5 5 C 1.50704 * 109.47171 * 294.80405 * 4 2 1 6 6 H 1.08000 * 119.99398 * 4.28087 * 5 4 2 7 7 C 1.37879 * 120.00062 * 184.29243 * 5 4 2 8 8 N 1.31507 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99861 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46993 * 59.99662 * 9 7 5 11 11 H 1.48500 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47220 * 299.99911 * 9 7 5 13 13 N 1.46902 * 109.47093 * 240.00067 * 2 1 3 14 14 C 1.45922 * 110.99922 * 59.71960 * 13 2 1 15 15 C 1.54537 * 113.13429 * 128.03884 * 14 13 2 16 16 S 1.84192 * 101.40168 * 23.18790 * 15 14 13 17 17 C 1.48009 * 111.00376 * 188.90052 * 13 2 1 18 18 H 1.09001 * 109.47329 * 179.97438 * 1 2 3 19 19 H 1.09009 * 109.46849 * 299.99674 * 1 2 3 20 20 H 1.08997 * 109.47384 * 59.99324 * 1 2 3 21 21 H 1.09001 * 109.47181 * 54.80020 * 4 2 1 22 22 H 1.08999 * 109.47598 * 174.79891 * 4 2 1 23 23 H 0.96999 * 119.99954 * 180.02562 * 8 7 5 24 24 H 1.08999 * 108.76080 * 249.00495 * 14 13 2 25 25 H 1.09003 * 108.75720 * 7.07832 * 14 13 2 26 26 H 1.09002 * 111.03483 * 141.21662 * 15 14 13 27 27 H 1.08998 * 111.04252 * 265.15523 * 15 14 13 28 28 H 1.09004 * 110.77513 * 326.46320 * 17 13 2 29 29 H 1.09002 * 110.77786 * 89.88681 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6455 0.0595 2.4764 6 1 1.0283 0.9405 2.3804 7 6 2.0728 -0.3509 3.7214 8 7 2.8241 -1.4239 3.8381 9 14 1.5844 0.6173 5.2424 10 1 0.1042 0.6401 5.3605 11 1 2.1667 -0.0265 6.4472 12 1 2.0933 2.0077 5.1287 13 7 2.0196 -0.6925 -1.1995 14 6 1.5463 -0.0346 -2.4129 15 6 2.6823 0.2952 -3.4073 16 16 3.9696 -0.9233 -2.9068 17 6 3.4835 -0.9002 -1.1317 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 1.6026 -1.7186 1.2969 22 1 3.1260 -0.8027 1.2038 23 1 3.1244 -1.7128 4.7140 24 1 0.8261 -0.6867 -2.9071 25 1 1.0429 0.8917 -2.1359 26 1 2.3630 0.1269 -4.4359 27 1 3.0368 1.3170 -3.2716 28 1 3.9673 -0.0750 -0.6090 29 1 3.7173 -1.8518 -0.6543 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695905228.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = -0.480419 kcal Electronic energy + Delta-G solvation = -11332.318843 eV Core-core repulsion = 9381.412339 eV Total energy + Delta-G solvation = -1950.906503 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.04542 -33.58361 -31.69141 -29.67431 -27.48081 -25.12319 -23.70902 -21.42363 -19.20209 -17.00368 -16.06798 -15.46592 -14.92060 -14.44524 -13.79783 -13.46923 -13.19348 -12.26055 -12.19767 -11.83210 -11.64910 -11.51803 -11.09803 -10.90735 -10.84833 -10.45563 -10.08098 -9.83664 -9.30034 -9.17349 -8.39390 -7.90670 -7.55266 -6.04250 -4.06736 2.00912 2.40320 3.30380 3.35525 3.37054 4.12807 4.44515 4.71280 4.95448 5.31839 5.44257 5.61712 5.64018 5.83866 5.89976 6.02218 6.10611 6.22783 6.55489 6.77297 6.99656 7.28340 7.44442 7.65118 7.76980 7.98385 8.36243 8.98654 9.57029 11.07104 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.058560 B = 0.008545 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.023530 B = 3275.871784 C = 3575.127211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.031 0.969 4 C 0.029 3.971 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.550 5.550 14 C 0.055 3.945 15 C -0.078 4.078 16 S -0.318 6.318 17 C 0.138 3.862 18 H 0.056 0.944 19 H 0.068 0.932 20 H 0.032 0.968 21 H 0.024 0.976 22 H 0.021 0.979 23 H 0.262 0.738 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 3.472 -10.655 11.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.009 4.009 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.277 5.277 14 C -0.075 4.075 15 C -0.228 4.228 16 S -0.092 6.092 17 C -0.099 4.099 18 H 0.075 0.925 19 H 0.087 0.913 20 H 0.051 0.949 21 H 0.042 0.958 22 H 0.040 0.960 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.791 2.308 -11.175 11.438 hybrid contribution -0.672 1.836 1.516 2.474 sum -1.462 4.145 -9.658 10.611 Atomic orbital electron populations 1.21801 0.94881 1.01845 1.00274 1.22045 0.95345 0.95214 0.89634 0.95061 1.19226 0.96447 0.95989 0.89203 1.21125 1.32054 1.11438 0.91306 0.92617 1.24984 0.95081 0.95102 0.99054 1.69947 1.35383 1.23810 1.24021 0.86664 0.78849 0.80120 0.82411 1.20199 1.21271 1.20303 1.61734 1.10000 1.53370 1.02572 1.22565 0.96501 0.98617 0.89795 1.24610 0.95477 0.99613 1.03089 1.88021 1.49150 1.59186 1.12882 1.24919 0.88785 1.05516 0.90657 0.92485 0.91323 0.94865 0.95810 0.96031 0.92866 0.90288 0.91925 0.87450 0.89527 0.91009 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.86 37.15 0.33 -2.06 15 2 C 0.09 1.73 1.81 -67.72 -0.12 1.61 15 3 H 0.03 0.65 8.14 -51.93 -0.42 0.22 15 4 C 0.03 0.72 4.28 -27.88 -0.12 0.60 15 5 C -0.52 -14.15 8.48 -34.44 -0.29 -14.44 15 6 H 0.06 1.46 6.92 -52.49 -0.36 1.10 15 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 8 N -0.89 -26.29 13.29 55.43 0.74 -25.56 15 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 13 N -0.55 -9.91 4.64 -228.48 -1.06 -10.97 15 14 C 0.05 0.79 5.67 -3.55 -0.02 0.77 15 15 C -0.08 -1.00 7.58 37.96 0.29 -0.71 15 16 S -0.32 -5.06 23.43 -107.50 -2.52 -7.58 15 17 C 0.14 2.48 5.77 60.68 0.35 2.83 15 18 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 19 H 0.07 1.32 6.88 -51.92 -0.36 0.96 15 20 H 0.03 0.51 6.55 -51.93 -0.34 0.17 15 21 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.02 0.57 6.46 -51.93 -0.34 0.23 15 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.06 0.86 6.35 -51.93 -0.33 0.53 15 26 H 0.11 1.12 8.14 -51.93 -0.42 0.70 15 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.07 1.33 7.57 -51.93 -0.39 0.94 15 29 H 0.12 2.17 7.99 -51.93 -0.42 1.76 15 LS Contribution 246.00 15.07 3.71 3.71 Total: -1.00 -28.82 246.00 -8.04 -36.87 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.20 Total: -2.83 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 0.32 Total: -9.84 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.32 Total: -36.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -2.52 Total: -7.58 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.82 -8.04 -36.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695905228.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.385 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds