Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47329 * 2 1 4 4 C 1.52998 * 109.47426 * 120.00267 * 2 1 3 5 5 C 1.50704 * 109.47171 * 294.80405 * 4 2 1 6 6 H 1.08000 * 119.99398 * 4.28087 * 5 4 2 7 7 C 1.37879 * 120.00062 * 184.29243 * 5 4 2 8 8 N 1.31507 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99861 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46993 * 59.99662 * 9 7 5 11 11 H 1.48500 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47220 * 299.99911 * 9 7 5 13 13 N 1.46902 * 109.47093 * 240.00067 * 2 1 3 14 14 C 1.45922 * 110.99922 * 59.71960 * 13 2 1 15 15 C 1.54537 * 113.13429 * 128.03884 * 14 13 2 16 16 S 1.84192 * 101.40168 * 23.18790 * 15 14 13 17 17 C 1.48009 * 111.00376 * 188.90052 * 13 2 1 18 18 H 1.09001 * 109.47329 * 179.97438 * 1 2 3 19 19 H 1.09009 * 109.46849 * 299.99674 * 1 2 3 20 20 H 1.08997 * 109.47384 * 59.99324 * 1 2 3 21 21 H 1.09001 * 109.47181 * 54.80020 * 4 2 1 22 22 H 1.08999 * 109.47598 * 174.79891 * 4 2 1 23 23 H 0.96999 * 119.99954 * 180.02562 * 8 7 5 24 24 H 1.08999 * 108.76080 * 249.00495 * 14 13 2 25 25 H 1.09003 * 108.75720 * 7.07832 * 14 13 2 26 26 H 1.09002 * 111.03483 * 141.21662 * 15 14 13 27 27 H 1.08998 * 111.04252 * 265.15523 * 15 14 13 28 28 H 1.09004 * 110.77513 * 326.46320 * 17 13 2 29 29 H 1.09002 * 110.77786 * 89.88681 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6455 0.0595 2.4764 6 1 1.0283 0.9405 2.3804 7 6 2.0728 -0.3509 3.7214 8 7 2.8241 -1.4239 3.8381 9 14 1.5844 0.6173 5.2424 10 1 0.1042 0.6401 5.3605 11 1 2.1667 -0.0265 6.4472 12 1 2.0933 2.0077 5.1287 13 7 2.0196 -0.6925 -1.1995 14 6 1.5463 -0.0346 -2.4129 15 6 2.6823 0.2952 -3.4073 16 16 3.9696 -0.9233 -2.9068 17 6 3.4835 -0.9002 -1.1317 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 1.6026 -1.7186 1.2969 22 1 3.1260 -0.8027 1.2038 23 1 3.1244 -1.7128 4.7140 24 1 0.8261 -0.6867 -2.9071 25 1 1.0429 0.8917 -2.1359 26 1 2.3630 0.1269 -4.4359 27 1 3.0368 1.3170 -3.2716 28 1 3.9673 -0.0750 -0.6090 29 1 3.7173 -1.8518 -0.6543 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695905228.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = -19.081707 kcal Electronic energy + Delta-G solvation = -11333.125455 eV Core-core repulsion = 9381.412339 eV Total energy + Delta-G solvation = -1951.713116 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50868 -35.44704 -33.42446 -31.00546 -29.30548 -26.56291 -25.55165 -22.86800 -20.78009 -18.78933 -17.67612 -16.91162 -16.41645 -16.25811 -15.21171 -14.90652 -14.61604 -14.10530 -13.70377 -13.41572 -13.03835 -12.93518 -12.76461 -12.69072 -12.35887 -12.27430 -11.84481 -11.28440 -11.14190 -11.04243 -10.53543 -9.29539 -8.85313 -8.18344 -6.28313 0.76316 1.17010 1.41535 1.43826 1.51502 2.40543 2.77946 3.16029 3.57641 3.96903 4.12133 4.30091 4.34235 4.44741 4.55043 4.59749 4.67904 4.93402 5.03821 5.18713 5.39785 5.46664 5.61523 5.75468 5.96676 6.17002 6.29476 6.87348 7.40401 8.93651 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.058560 B = 0.008545 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.023530 B = 3275.871784 C = 3575.127211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.097 3.903 3 H 0.030 0.970 4 C 0.036 3.964 5 C -0.534 4.534 6 H 0.065 0.935 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.560 5.560 14 C 0.049 3.951 15 C -0.063 4.063 16 S -0.330 6.330 17 C 0.137 3.863 18 H 0.047 0.953 19 H 0.056 0.944 20 H 0.070 0.930 21 H -0.010 1.010 22 H -0.003 1.003 23 H 0.262 0.738 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 5.123 -11.828 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.012 4.012 3 H 0.047 0.953 4 C -0.001 4.001 5 C -0.572 4.572 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.287 5.287 14 C -0.079 4.079 15 C -0.211 4.211 16 S -0.105 6.105 17 C -0.101 4.101 18 H 0.066 0.934 19 H 0.075 0.925 20 H 0.089 0.911 21 H 0.008 0.992 22 H 0.015 0.985 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.096 0.904 26 H 0.158 0.842 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.988 3.971 -12.373 13.146 hybrid contribution -0.290 1.303 1.794 2.236 sum -2.278 5.274 -10.579 12.038 Atomic orbital electron populations 1.21715 0.93126 1.01653 1.01545 1.21745 0.96574 0.94222 0.88627 0.95253 1.19055 0.94751 0.94699 0.91625 1.21560 1.31730 1.11680 0.92237 0.91705 1.25918 0.95033 0.96072 1.02590 1.70097 1.36817 1.25666 1.24757 0.85550 0.78912 0.78790 0.78100 1.19063 1.21248 1.19222 1.61674 1.09843 1.53937 1.03248 1.22683 0.97269 0.99389 0.88609 1.24782 0.93023 0.99134 1.04183 1.88062 1.50774 1.60926 1.10744 1.24674 0.89110 1.03870 0.92402 0.93394 0.92463 0.91114 0.99152 0.98519 0.92904 0.88872 0.90415 0.84204 0.88024 0.92346 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.86 71.98 0.64 -3.66 15 2 C 0.10 3.88 1.81 44.91 0.08 3.97 15 3 H 0.03 1.19 8.14 -2.39 -0.02 1.17 15 4 C 0.04 1.87 4.28 29.85 0.13 2.00 15 5 C -0.53 -29.34 8.48 25.60 0.22 -29.12 15 6 H 0.06 3.37 6.92 -2.91 -0.02 3.35 15 7 C 0.00 0.10 5.46 84.66 0.46 0.56 15 8 N -0.93 -56.48 13.29 21.45 0.28 -56.19 15 9 Si 0.96 43.55 29.54 68.60 2.03 45.58 15 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 15 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 13 N -0.56 -19.75 4.64 -876.78 -4.06 -23.81 15 14 C 0.05 1.25 5.67 87.01 0.49 1.75 15 15 C -0.06 -1.36 7.58 72.50 0.55 -0.81 15 16 S -0.33 -10.10 23.43 -56.49 -1.32 -11.42 15 17 C 0.14 5.02 5.77 127.48 0.74 5.75 15 18 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 19 H 0.06 2.12 6.88 -2.38 -0.02 2.10 15 20 H 0.07 1.93 6.55 -2.39 -0.02 1.92 15 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 15 22 H 0.00 -0.20 6.46 -2.39 -0.02 -0.21 15 23 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.08 1.81 6.35 -2.39 -0.02 1.79 15 26 H 0.14 2.23 8.14 -2.39 -0.02 2.21 15 27 H 0.10 1.98 8.14 -2.39 -0.02 1.97 15 28 H 0.06 2.25 7.57 -2.38 -0.02 2.23 15 29 H 0.09 3.73 7.99 -2.39 -0.02 3.71 15 Total: -1.00 -62.83 246.00 1.34 -61.48 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.11 Total: 3.93 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 3.30 Total: -19.57 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -3.78 Total: -80.01 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -10.10 SS G_CDS: -1.32 Total: -11.42 kcal Total: -62.83 1.34 -61.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695905228.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.402 kcal (2) G-P(sol) polarization free energy of solvation -62.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds