Wall clock time and date at job start Mon Mar 30 2020 02:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47223 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.46796 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47239 * 329.99785 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 C 1.53044 * 113.15207 * 255.54385 * 14 13 2 16 16 S 1.81497 * 89.86354 * 211.86444 * 15 14 13 17 17 C 1.53041 * 113.15473 * 155.11678 * 14 13 2 18 18 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 21 21 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 22 22 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 23 23 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 24 24 H 1.00902 * 111.00328 * 151.04219 * 13 2 1 25 25 H 1.09003 * 112.49540 * 25.33035 * 14 13 2 26 26 H 1.08997 * 113.14655 * 327.11243 * 15 14 13 27 27 H 1.09000 * 113.14364 * 96.59296 * 15 14 13 28 28 H 1.09010 * 113.14612 * 263.40712 * 17 14 13 29 29 H 1.08996 * 113.14992 * 32.84487 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.7009 -2.2129 -1.7247 11 1 6.5290 -1.0694 -3.8562 12 1 6.5261 0.2048 -1.7929 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 6 3.5077 0.6651 2.6863 16 16 3.0530 0.7693 4.4403 17 6 1.9871 -0.4955 3.6950 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.7517 -1.7714 -1.2057 22 1 1.6054 -0.2616 -2.1371 23 1 4.0608 -2.2443 -4.0351 24 1 2.9173 -1.1205 1.0286 25 1 1.3855 1.0555 2.2547 26 1 4.2546 -0.1020 2.4820 27 1 3.7711 1.6302 2.2534 28 1 0.9777 -0.5020 4.1065 29 1 2.4398 -1.4870 3.6854 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702020253.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:12 Heat of formation + Delta-G solvation = -11.591522 kcal Electronic energy + Delta-G solvation = -11237.087694 eV Core-core repulsion = 9285.699377 eV Total energy + Delta-G solvation = -1951.388317 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.16877 -36.08310 -34.23760 -30.00179 -29.23422 -27.16640 -25.09959 -22.03453 -21.23828 -18.47493 -17.58257 -16.94097 -16.54623 -15.85386 -15.47062 -14.71815 -14.13973 -13.85866 -13.61271 -13.50123 -13.22859 -12.78687 -12.64478 -12.56925 -12.36852 -12.22362 -11.80418 -11.43999 -11.14116 -10.90563 -10.55051 -9.28501 -8.84015 -8.17277 -6.27309 0.82312 0.97787 1.41513 1.42481 1.51676 2.41556 3.13136 3.31137 3.61314 3.93293 4.04977 4.36883 4.42060 4.49674 4.63424 4.71299 4.77947 4.83869 5.08924 5.25443 5.39613 5.53157 5.57322 5.87428 6.22270 6.34285 6.57030 6.88925 7.41884 8.94282 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.035580 B = 0.009802 C = 0.008007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.762030 B = 2855.979393 C = 3495.929891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.096 3.904 3 H 0.033 0.967 4 C 0.025 3.975 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.665 5.665 14 C 0.093 3.907 15 C -0.103 4.103 16 S -0.337 6.337 17 C -0.053 4.053 18 H 0.064 0.936 19 H 0.050 0.950 20 H 0.051 0.949 21 H -0.001 1.001 22 H -0.004 1.004 23 H 0.262 0.738 24 H 0.351 0.649 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 3.738 10.721 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.014 4.014 3 H 0.051 0.949 4 C -0.013 4.013 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.297 5.297 14 C -0.020 4.020 15 C -0.253 4.253 16 S -0.113 6.113 17 C -0.202 4.202 18 H 0.083 0.917 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.017 0.983 22 H 0.014 0.986 23 H 0.071 0.929 24 H 0.173 0.827 25 H 0.136 0.864 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.666 4.067 11.959 12.910 hybrid contribution 1.613 -0.148 -1.642 2.307 sum -1.053 3.919 10.318 11.087 Atomic orbital electron populations 1.21751 0.94369 1.01597 1.01115 1.21462 0.95130 0.95150 0.89628 0.94936 1.19164 0.94828 0.94902 0.92364 1.21551 0.93234 1.33865 1.08339 0.91969 1.25841 1.02937 0.94966 0.95472 1.70088 1.37431 1.36801 1.12746 0.85593 0.80321 0.78836 0.77157 1.19851 1.21392 1.18949 1.60511 1.34052 1.31034 1.04145 1.23020 0.93601 0.94598 0.90809 1.25349 1.03069 1.05974 0.90922 1.88866 1.52421 1.52432 1.17554 1.24522 1.02310 0.99243 0.94128 0.91698 0.93116 0.92952 0.98261 0.98614 0.92931 0.82680 0.86417 0.87723 0.88823 0.87203 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.40 71.98 0.68 -3.48 15 2 C 0.10 3.60 2.45 44.92 0.11 3.71 15 3 H 0.03 1.23 7.85 -2.39 -0.02 1.21 15 4 C 0.02 1.22 4.57 29.85 0.14 1.36 15 5 C -0.53 -27.78 8.12 25.60 0.21 -27.58 15 6 H 0.06 3.06 7.49 -2.91 -0.02 3.04 15 7 C 0.01 0.33 5.46 84.65 0.46 0.80 15 8 N -0.93 -54.71 13.29 21.45 0.28 -54.43 15 9 Si 0.96 42.49 29.54 68.60 2.03 44.52 15 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 15 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 13 N -0.66 -22.10 6.39 -504.18 -3.22 -25.32 15 14 C 0.09 2.49 3.53 44.94 0.16 2.65 15 15 C -0.10 -2.78 7.55 72.00 0.54 -2.24 15 16 S -0.34 -9.03 24.80 -56.49 -1.40 -10.43 15 17 C -0.05 -1.26 7.76 72.00 0.56 -0.70 15 18 H 0.06 1.72 7.69 -2.39 -0.02 1.70 15 19 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 20 H 0.05 1.63 8.14 -2.38 -0.02 1.61 15 21 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 22 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 23 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 24 H 0.35 12.91 6.71 -89.69 -0.60 12.31 15 25 H 0.12 3.02 7.44 -2.39 -0.02 3.00 15 26 H 0.10 2.87 7.88 -2.39 -0.02 2.85 15 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 28 H 0.11 2.27 8.14 -2.38 -0.02 2.25 15 29 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -57.83 254.53 1.06 -56.77 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.52 Total: 14.39 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 2.85 Total: -25.49 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.93 Total: -79.75 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.40 Total: -10.43 kcal Total: -57.83 1.06 -56.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702020253.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.174 kcal (2) G-P(sol) polarization free energy of solvation -57.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds