Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46894 * 109.47018 * 239.99269 * 2 1 3 14 14 C 1.46908 * 110.99955 * 85.00186 * 13 2 1 15 15 C 1.53038 * 113.15295 * 255.37407 * 14 13 2 16 16 S 1.81425 * 89.89026 * 211.85038 * 15 14 13 17 17 C 1.53038 * 113.15299 * 154.99845 * 14 13 2 18 18 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 19 19 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 20 20 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 21 21 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 22 22 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 23 23 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 24 24 H 1.00904 * 110.99833 * 208.95227 * 13 2 1 25 25 H 1.08997 * 112.48997 * 25.21646 * 14 13 2 26 26 H 1.09001 * 113.14715 * 327.11095 * 15 14 13 27 27 H 1.08998 * 113.14929 * 96.59120 * 15 14 13 28 28 H 1.09005 * 113.14741 * 263.40658 * 17 14 13 29 29 H 1.09000 * 113.15017 * 32.84916 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 7 2.0196 -0.6926 -1.1993 14 6 2.0824 0.2224 -2.3469 15 6 0.9504 0.0039 -3.3533 16 16 2.0547 0.5115 -4.7003 17 6 3.1011 -0.2082 -3.4047 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.7516 -1.7714 1.2058 22 1 1.6053 -0.2616 2.1370 23 1 2.6093 -1.9019 3.2614 24 1 2.9173 -1.1206 -1.0285 25 1 2.1929 1.2637 -2.0444 26 1 0.6365 -1.0374 -3.4258 27 1 0.1109 0.6839 -3.2082 28 1 4.0631 0.2941 -3.3027 29 1 3.2023 -1.2904 -3.4867 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702020254.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = 2.429366 kcal Electronic energy + Delta-G solvation = -11226.991560 eV Core-core repulsion = 9276.211234 eV Total energy + Delta-G solvation = -1950.780326 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.84493 -34.71506 -32.44479 -28.68788 -27.12636 -26.06192 -23.04607 -20.77018 -19.90241 -16.83519 -16.45940 -15.57795 -15.11391 -14.40672 -13.75440 -13.14037 -12.81930 -12.67923 -12.51534 -12.01605 -11.51494 -11.40308 -11.02469 -10.88991 -10.69359 -10.56843 -10.23351 -10.13689 -9.50692 -8.62634 -8.40638 -8.00102 -7.75673 -6.42809 -4.13628 1.87507 2.03144 3.39276 3.40393 3.59157 4.48476 4.51334 4.61017 5.04670 5.26288 5.38748 5.46517 5.53037 5.70394 5.77192 5.94766 6.02656 6.14603 6.36934 6.69765 6.73891 7.18430 7.32513 7.75212 7.98826 8.10187 8.36239 8.80426 9.59329 10.97768 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.041868 B = 0.008900 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.610920 B = 3145.144061 C = 3710.385205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.093 3.907 3 H 0.035 0.965 4 C 0.006 3.994 5 C -0.607 4.607 6 H 0.046 0.954 7 C 0.019 3.981 8 N -0.908 5.908 9 Si 1.066 2.934 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.666 5.666 14 C 0.083 3.917 15 C -0.062 4.062 16 S -0.319 6.319 17 C -0.081 4.081 18 H 0.055 0.945 19 H 0.048 0.952 20 H 0.039 0.961 21 H 0.018 0.982 22 H 0.013 0.987 23 H 0.270 0.730 24 H 0.363 0.637 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 3.212 -10.175 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 H 0.053 0.947 4 C -0.032 4.032 5 C -0.645 4.645 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.544 5.544 9 Si 0.894 3.106 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.302 5.302 14 C -0.030 4.030 15 C -0.211 4.211 16 S -0.095 6.095 17 C -0.230 4.230 18 H 0.074 0.926 19 H 0.067 0.933 20 H 0.058 0.942 21 H 0.036 0.964 22 H 0.031 0.969 23 H 0.081 0.919 24 H 0.187 0.813 25 H 0.105 0.895 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.227 3.134 -10.740 11.407 hybrid contribution -0.617 0.522 0.216 0.837 sum -2.844 3.656 -10.523 11.498 Atomic orbital electron populations 1.21833 0.96492 1.01416 0.99785 1.21578 0.93418 0.95901 0.90773 0.94723 1.19421 0.96583 0.95624 0.91533 1.21972 0.91836 1.38908 1.11820 0.93614 1.25791 1.06793 0.93373 0.92612 1.70777 1.10515 1.39485 1.33638 0.83580 0.74486 0.76240 0.76266 1.20739 1.21399 1.21553 1.60711 1.34684 1.30676 1.04099 1.22939 0.91317 0.97256 0.91462 1.24632 1.00701 1.04907 0.90893 1.88780 1.11033 1.79342 1.30354 1.24672 1.01798 1.04233 0.92311 0.92611 0.93252 0.94166 0.96420 0.96876 0.91942 0.81328 0.89540 0.87303 0.89353 0.88783 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.42 37.16 0.35 -1.96 15 2 C 0.09 1.82 2.59 -67.72 -0.18 1.64 15 3 H 0.03 0.70 7.46 -51.93 -0.39 0.32 15 4 C 0.01 0.14 3.88 -27.88 -0.11 0.03 15 5 C -0.61 -16.18 8.12 -34.44 -0.28 -16.46 15 6 H 0.05 1.19 7.49 -52.49 -0.39 0.79 15 7 C 0.02 0.53 5.46 -17.82 -0.10 0.43 15 8 N -0.91 -27.07 13.65 55.43 0.76 -26.31 15 9 Si 1.07 24.43 29.90 -169.99 -5.08 19.35 15 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 11 H -0.29 -6.25 7.11 56.52 0.40 -5.84 15 12 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 13 N -0.67 -11.72 6.33 -110.72 -0.70 -12.43 15 14 C 0.08 1.23 3.62 -67.67 -0.25 0.99 15 15 C -0.06 -0.83 7.48 37.18 0.28 -0.55 15 16 S -0.32 -4.53 24.80 -107.50 -2.67 -7.19 15 17 C -0.08 -1.10 7.51 37.18 0.28 -0.82 15 18 H 0.05 0.95 8.14 -51.93 -0.42 0.52 15 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.04 0.59 7.69 -51.93 -0.40 0.20 15 21 H 0.02 0.45 8.01 -51.93 -0.42 0.04 15 22 H 0.01 0.34 8.00 -51.93 -0.42 -0.08 15 23 H 0.27 8.02 7.22 -40.82 -0.29 7.73 15 24 H 0.36 6.99 7.00 -39.29 -0.28 6.72 15 25 H 0.09 1.33 7.47 -51.93 -0.39 0.95 15 26 H 0.11 1.44 8.14 -51.93 -0.42 1.02 15 27 H 0.09 1.11 8.04 -51.93 -0.42 0.70 15 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 15 29 H 0.11 1.44 8.14 -51.93 -0.42 1.01 15 LS Contribution 253.17 15.07 3.82 3.82 Total: -1.00 -28.18 253.17 -8.17 -36.35 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.30 Total: 3.12 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 0.00 Total: -16.71 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.06 Total: -38.74 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.08 Total: 19.35 kcal Atomic # 16 Polarization: -4.53 SS G_CDS: -2.67 Total: -7.19 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.18 -8.17 -36.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702020254.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.777 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds