Wall clock time and date at job start Mon Mar 30 2020 02:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.46886 * 119.99346 * 2 1 3 5 5 C 1.50706 * 109.47153 * 184.99546 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46894 * 109.47018 * 239.99269 * 2 1 3 14 14 C 1.46908 * 110.99955 * 85.00186 * 13 2 1 15 15 C 1.53038 * 113.15295 * 255.37407 * 14 13 2 16 16 S 1.81425 * 89.89026 * 211.85038 * 15 14 13 17 17 C 1.53038 * 113.15299 * 154.99845 * 14 13 2 18 18 H 1.08995 * 109.47190 * 180.02562 * 1 2 3 19 19 H 1.09007 * 109.46878 * 300.00364 * 1 2 3 20 20 H 1.09001 * 109.46923 * 60.00438 * 1 2 3 21 21 H 1.09004 * 109.47178 * 65.00336 * 4 2 1 22 22 H 1.08993 * 109.47411 * 305.00018 * 4 2 1 23 23 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 24 24 H 1.00904 * 110.99833 * 208.95227 * 13 2 1 25 25 H 1.08997 * 112.48997 * 25.21646 * 14 13 2 26 26 H 1.09001 * 113.14715 * 327.11095 * 15 14 13 27 27 H 1.08998 * 113.14929 * 96.59120 * 15 14 13 28 28 H 1.09005 * 113.14741 * 263.40658 * 17 14 13 29 29 H 1.09000 * 113.15017 * 32.84916 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0856 0.5396 7 6 4.2304 -1.1934 2.3579 8 7 3.5760 -1.8334 3.3023 9 14 6.0921 -1.0611 2.4369 10 1 6.5866 -1.7559 3.6526 11 1 6.6848 -1.6922 1.2304 12 1 6.4847 0.3700 2.4905 13 7 2.0196 -0.6926 -1.1993 14 6 2.0824 0.2224 -2.3469 15 6 0.9504 0.0039 -3.3533 16 16 2.0547 0.5115 -4.7003 17 6 3.1011 -0.2082 -3.4047 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.7516 -1.7714 1.2058 22 1 1.6053 -0.2616 2.1370 23 1 2.6093 -1.9019 3.2614 24 1 2.9173 -1.1206 -1.0285 25 1 2.1929 1.2637 -2.0444 26 1 0.6365 -1.0374 -3.4258 27 1 0.1109 0.6839 -3.2082 28 1 4.0631 0.2941 -3.3027 29 1 3.2023 -1.2904 -3.4867 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702020254.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:14 Heat of formation + Delta-G solvation = -15.294935 kcal Electronic energy + Delta-G solvation = -11227.760143 eV Core-core repulsion = 9276.211234 eV Total energy + Delta-G solvation = -1951.548909 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.21548 -36.33977 -34.32411 -30.10545 -28.96829 -27.17553 -25.04289 -22.03829 -21.48668 -18.88994 -17.63186 -16.77441 -16.62620 -15.82848 -15.56859 -14.96146 -14.11270 -13.95623 -13.83619 -13.34538 -13.27609 -12.99945 -12.60851 -12.48903 -12.33202 -11.96266 -11.74771 -11.65744 -11.05401 -10.62471 -10.52482 -9.43353 -8.87196 -8.64077 -6.35194 0.78217 0.92634 1.54974 1.62071 1.80437 2.58642 3.14331 3.33370 3.35910 3.91053 4.06153 4.23121 4.41613 4.45352 4.51082 4.58959 4.67509 4.80582 4.96017 5.10758 5.19786 5.30064 5.45383 5.98593 6.21208 6.22919 6.45892 6.61820 7.46736 8.76776 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.041868 B = 0.008900 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.610920 B = 3145.144061 C = 3710.385205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.101 3.899 3 H 0.029 0.971 4 C 0.009 3.991 5 C -0.609 4.609 6 H 0.053 0.947 7 C -0.036 4.036 8 N -0.939 5.939 9 Si 1.114 2.886 10 H -0.289 1.289 11 H -0.266 1.266 12 H -0.273 1.273 13 N -0.664 5.664 14 C 0.080 3.920 15 C -0.051 4.051 16 S -0.331 6.331 17 C -0.075 4.075 18 H 0.051 0.949 19 H 0.050 0.950 20 H 0.065 0.935 21 H -0.004 1.004 22 H -0.010 1.010 23 H 0.256 0.744 24 H 0.352 0.648 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 3.842 -11.594 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.009 4.009 3 H 0.047 0.953 4 C -0.029 4.029 5 C -0.647 4.647 6 H 0.071 0.929 7 C -0.234 4.234 8 N -0.577 5.577 9 Si 0.935 3.065 10 H -0.215 1.215 11 H -0.191 1.191 12 H -0.199 1.199 13 N -0.298 5.298 14 C -0.032 4.032 15 C -0.200 4.200 16 S -0.107 6.107 17 C -0.224 4.224 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.084 0.916 21 H 0.014 0.986 22 H 0.009 0.991 23 H 0.065 0.935 24 H 0.174 0.826 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.843 3.781 -12.194 12.899 hybrid contribution -0.782 0.345 0.624 1.059 sum -2.625 4.126 -11.569 12.560 Atomic orbital electron populations 1.21748 0.94190 1.01650 1.01176 1.21403 0.95237 0.94766 0.89474 0.95292 1.19337 0.95653 0.94676 0.93192 1.22344 0.93118 1.37765 1.11439 0.92892 1.27268 1.10969 0.92750 0.92369 1.70912 1.09773 1.41831 1.35184 0.82968 0.69590 0.77148 0.76745 1.21494 1.19059 1.19853 1.60735 1.34014 1.31133 1.03965 1.23002 0.92951 0.96552 0.90711 1.24552 1.00392 1.05500 0.89598 1.88890 1.11691 1.79465 1.30619 1.24645 1.01722 1.04704 0.91283 0.92949 0.93046 0.91597 0.98569 0.99134 0.93454 0.82560 0.89739 0.86859 0.88129 0.88093 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.42 71.98 0.68 -3.47 15 2 C 0.10 3.87 2.59 44.92 0.12 3.98 15 3 H 0.03 1.14 7.46 -2.39 -0.02 1.12 15 4 C 0.01 0.43 3.88 29.85 0.12 0.55 15 5 C -0.61 -32.38 8.12 25.60 0.21 -32.17 15 6 H 0.05 2.69 7.49 -2.91 -0.02 2.67 15 7 C -0.04 -1.99 5.46 84.65 0.46 -1.52 15 8 N -0.94 -57.00 13.65 21.45 0.29 -56.71 15 9 Si 1.11 48.45 29.90 68.60 2.05 50.50 15 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 11 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 13 N -0.66 -22.43 6.33 -504.22 -3.19 -25.62 15 14 C 0.08 2.20 3.62 44.94 0.16 2.36 15 15 C -0.05 -1.24 7.48 71.99 0.54 -0.70 15 16 S -0.33 -8.60 24.80 -56.49 -1.40 -10.00 15 17 C -0.07 -1.86 7.51 71.99 0.54 -1.32 15 18 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 19 H 0.05 1.61 8.14 -2.38 -0.02 1.59 15 20 H 0.07 1.77 7.69 -2.39 -0.02 1.75 15 21 H 0.00 -0.21 8.01 -2.39 -0.02 -0.23 15 22 H -0.01 -0.51 8.00 -2.39 -0.02 -0.53 15 23 H 0.26 15.75 7.22 -92.71 -0.67 15.08 15 24 H 0.35 13.20 7.00 -89.69 -0.63 12.57 15 25 H 0.08 2.41 7.47 -2.39 -0.02 2.39 15 26 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.10 2.20 8.04 -2.39 -0.02 2.18 15 28 H 0.10 2.38 8.14 -2.38 -0.02 2.36 15 29 H 0.12 2.78 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -59.61 253.17 1.17 -58.45 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.59 Total: 15.68 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 2.82 Total: -32.29 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.90 Total: -82.33 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.50 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.40 Total: -10.00 kcal Total: -59.61 1.17 -58.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702020254.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.154 kcal (2) G-P(sol) polarization free energy of solvation -59.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds