Wall clock time and date at job start Mon Mar 30 2020 02:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81407 * 102.99786 * 2 1 4 4 H 1.09003 * 112.90672 * 316.24960 * 3 2 1 5 5 C 1.53776 * 113.61324 * 87.50280 * 3 2 1 6 6 C 1.53776 * 87.08256 * 139.97857 * 5 3 2 7 7 C 1.53780 * 113.61026 * 184.99879 * 3 2 1 8 8 H 1.08999 * 113.69036 * 334.57809 * 7 3 2 9 9 N 1.46903 * 113.61324 * 105.47124 * 7 3 2 10 10 C 1.46893 * 110.99924 * 201.99644 * 9 7 3 11 11 C 1.50706 * 109.47176 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 H 1.08999 * 109.46855 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47046 * 300.00025 * 1 2 3 21 21 H 1.09004 * 109.46910 * 60.00280 * 1 2 3 22 22 H 1.09002 * 113.61642 * 25.42941 * 5 3 2 23 23 H 1.09002 * 113.69043 * 254.54237 * 5 3 2 24 24 H 1.09000 * 113.61804 * 220.01735 * 6 5 3 25 25 H 1.09006 * 113.61596 * 89.11491 * 6 5 3 26 26 H 1.00893 * 110.99793 * 325.95674 * 9 7 3 27 27 H 1.09001 * 109.46739 * 60.00281 * 10 9 7 28 28 H 1.09000 * 109.47767 * 300.00540 * 10 9 7 29 29 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6108 2.3441 -0.6943 5 6 2.3008 2.3816 1.4077 6 6 3.5206 3.1738 0.9084 7 6 3.7284 2.0520 -0.1228 8 1 4.3584 1.2388 0.2376 9 7 4.1290 2.5390 -1.4495 10 6 5.5591 2.3022 -1.6875 11 6 5.9321 2.8132 -3.0553 12 1 5.1819 3.2687 -3.6847 13 6 7.2310 2.6991 -3.5032 14 7 8.1445 2.1440 -2.7370 15 14 7.6935 3.3331 -5.1984 16 1 6.4930 3.9086 -5.8562 17 1 8.7370 4.3815 -5.0671 18 1 8.2181 2.2127 -6.0198 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 2.5394 1.6578 2.1870 23 1 1.4461 3.0091 1.6602 24 1 4.3237 3.2471 1.6417 25 1 3.2643 4.1349 0.4624 26 1 3.5672 2.1179 -2.1741 27 1 5.7646 1.2333 -1.6309 28 1 6.1448 2.8253 -0.9316 29 1 9.0584 2.0641 -3.0520 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702427829.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:13 Heat of formation + Delta-G solvation = 11.999758 kcal Electronic energy + Delta-G solvation = -10869.680914 eV Core-core repulsion = 8919.315592 eV Total energy + Delta-G solvation = -1950.365322 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.54506 -33.89167 -31.78050 -28.94395 -26.72058 -25.49672 -23.54927 -21.37445 -19.32779 -16.68764 -16.41075 -15.11338 -14.63942 -14.46308 -13.89749 -13.47113 -13.10867 -12.88537 -12.65658 -12.19435 -11.84638 -11.26153 -11.14204 -10.86757 -10.59339 -10.47961 -10.16118 -9.76442 -9.67483 -9.09808 -8.47759 -7.55607 -7.34767 -6.01410 -4.03366 1.84697 2.71093 3.32466 3.39458 3.44619 4.44487 4.66062 4.76368 5.06645 5.11406 5.14157 5.19377 5.34740 5.50233 5.64815 5.81162 5.90916 5.96222 6.29167 6.41350 6.64790 7.27641 7.43727 7.80084 8.13974 8.37769 8.60183 9.05791 9.61444 11.09814 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.053904 B = 0.007156 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.315699 B = 3911.965645 C = 4129.431831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.267 6.267 3 C -0.080 4.080 4 H 0.108 0.892 5 C -0.129 4.129 6 C -0.122 4.122 7 C 0.093 3.907 8 H 0.071 0.929 9 N -0.676 5.676 10 C 0.193 3.807 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 H 0.095 0.905 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.332 0.668 27 H -0.012 1.012 28 H 0.029 0.971 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 -1.434 6.773 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.209 4.209 4 H 0.126 0.874 5 C -0.169 4.169 6 C -0.162 4.162 7 C -0.020 4.020 8 H 0.089 0.911 9 N -0.306 5.306 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 H 0.114 0.886 20 H 0.092 0.908 21 H 0.092 0.908 22 H 0.107 0.893 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.150 0.850 27 H 0.006 0.994 28 H 0.047 0.953 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.123 -1.753 6.949 14.083 hybrid contribution -0.466 0.299 -1.096 1.228 sum -12.589 -1.454 5.853 13.959 Atomic orbital electron populations 1.23303 0.95212 1.05881 1.04566 1.87016 1.06392 1.12788 1.97664 1.25237 1.02135 0.92248 1.01244 0.87425 1.23111 0.99375 0.99512 0.94903 1.22953 0.96905 0.98528 0.97832 1.22813 0.90105 0.95611 0.93440 0.91137 1.60921 1.08144 1.60928 1.00633 1.19616 0.82019 0.94595 0.97180 1.21213 0.94659 1.38829 1.00508 0.91938 1.24991 0.96441 0.95410 0.97750 1.69981 1.02487 1.44439 1.36778 0.86427 0.78444 0.78476 0.83974 1.19669 1.21005 1.21089 0.88641 0.90818 0.90752 0.89340 0.91337 0.91310 0.89177 0.85046 0.99401 0.95324 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.76 101.05 1.09 -0.17 15 2 S -0.27 -3.92 22.18 -107.50 -2.38 -6.30 15 3 C -0.08 -1.17 3.88 -25.92 -0.10 -1.27 15 4 H 0.11 1.56 8.14 -51.93 -0.42 1.13 15 5 C -0.13 -1.65 7.67 -25.92 -0.20 -1.85 15 6 C -0.12 -1.88 7.88 -25.92 -0.20 -2.08 15 7 C 0.09 1.69 3.69 -66.90 -0.25 1.44 15 8 H 0.07 1.41 7.85 -51.93 -0.41 1.00 15 9 N -0.68 -14.71 6.53 -107.13 -0.70 -15.41 15 10 C 0.19 5.16 5.30 -4.98 -0.03 5.13 15 11 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 15 12 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 14 N -0.90 -27.20 13.29 55.43 0.74 -26.47 15 15 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 15 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 19 H 0.09 0.87 8.14 -51.92 -0.42 0.45 15 20 H 0.07 0.68 8.14 -51.92 -0.42 0.26 15 21 H 0.07 0.73 8.14 -51.92 -0.42 0.31 15 22 H 0.09 1.11 8.10 -51.93 -0.42 0.68 15 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.33 7.05 8.57 -39.30 -0.34 6.72 15 27 H -0.01 -0.34 8.13 -51.93 -0.42 -0.76 15 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -30.15 260.72 -8.06 -38.21 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.51 Total: 1.52 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.11 Total: -12.40 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.04 Total: -41.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.38 Total: -6.30 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.15 -8.06 -38.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702427829.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.213 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds