Wall clock time and date at job start Mon Mar 30 2020 02:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81407 * 102.99786 * 2 1 4 4 H 1.09003 * 112.90672 * 316.24960 * 3 2 1 5 5 C 1.53776 * 113.61324 * 87.50280 * 3 2 1 6 6 C 1.53776 * 87.08256 * 139.97857 * 5 3 2 7 7 C 1.53780 * 113.61026 * 184.99879 * 3 2 1 8 8 H 1.08999 * 113.69036 * 334.57809 * 7 3 2 9 9 N 1.46903 * 113.61324 * 105.47124 * 7 3 2 10 10 C 1.46893 * 110.99924 * 201.99644 * 9 7 3 11 11 C 1.50706 * 109.47176 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 H 1.08999 * 109.46855 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47046 * 300.00025 * 1 2 3 21 21 H 1.09004 * 109.46910 * 60.00280 * 1 2 3 22 22 H 1.09002 * 113.61642 * 25.42941 * 5 3 2 23 23 H 1.09002 * 113.69043 * 254.54237 * 5 3 2 24 24 H 1.09000 * 113.61804 * 220.01735 * 6 5 3 25 25 H 1.09006 * 113.61596 * 89.11491 * 6 5 3 26 26 H 1.00893 * 110.99793 * 325.95674 * 9 7 3 27 27 H 1.09001 * 109.46739 * 60.00281 * 10 9 7 28 28 H 1.09000 * 109.47767 * 300.00540 * 10 9 7 29 29 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6108 2.3441 -0.6943 5 6 2.3008 2.3816 1.4077 6 6 3.5206 3.1738 0.9084 7 6 3.7284 2.0520 -0.1228 8 1 4.3584 1.2388 0.2376 9 7 4.1290 2.5390 -1.4495 10 6 5.5591 2.3022 -1.6875 11 6 5.9321 2.8132 -3.0553 12 1 5.1819 3.2687 -3.6847 13 6 7.2310 2.6991 -3.5032 14 7 8.1445 2.1440 -2.7370 15 14 7.6935 3.3331 -5.1984 16 1 6.4930 3.9086 -5.8562 17 1 8.7370 4.3815 -5.0671 18 1 8.2181 2.2127 -6.0198 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 2.5394 1.6578 2.1870 23 1 1.4461 3.0091 1.6602 24 1 4.3237 3.2471 1.6417 25 1 3.2643 4.1349 0.4624 26 1 3.5672 2.1179 -2.1741 27 1 5.7646 1.2333 -1.6309 28 1 6.1448 2.8253 -0.9316 29 1 9.0584 2.0641 -3.0520 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702427829.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:13 Heat of formation + Delta-G solvation = -8.030662 kcal Electronic energy + Delta-G solvation = -10870.549499 eV Core-core repulsion = 8919.315592 eV Total energy + Delta-G solvation = -1951.233906 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.89725 -35.87623 -33.80355 -29.78744 -28.73979 -26.73311 -25.17187 -23.32230 -20.64846 -18.63172 -17.81249 -16.77684 -16.59692 -15.67392 -15.45632 -14.60014 -14.42074 -14.15363 -13.98189 -13.82833 -13.39077 -13.04334 -12.82162 -12.70172 -12.21208 -11.92327 -11.85657 -11.37251 -11.08954 -10.78997 -10.67920 -9.21264 -8.70556 -8.23842 -6.35729 0.78347 1.40747 1.41525 1.55683 1.68138 2.39389 3.09443 3.40298 3.55329 3.61314 3.92490 4.05717 4.36161 4.38242 4.55206 4.66347 4.86872 4.89277 5.02428 5.08500 5.09229 5.26286 5.40415 5.62418 6.00273 6.39079 6.66216 6.85108 7.35413 8.88266 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.053904 B = 0.007156 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.315699 B = 3911.965645 C = 4129.431831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 S -0.327 6.327 3 C -0.062 4.062 4 H 0.115 0.885 5 C -0.105 4.105 6 C -0.120 4.120 7 C 0.071 3.929 8 H 0.045 0.955 9 N -0.669 5.669 10 C 0.210 3.790 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.278 1.278 19 H 0.110 0.890 20 H 0.092 0.908 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.334 0.666 27 H -0.045 1.045 28 H 0.001 0.999 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 -0.697 6.442 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 S -0.099 6.099 3 C -0.191 4.191 4 H 0.134 0.866 5 C -0.146 4.146 6 C -0.160 4.160 7 C -0.041 4.041 8 H 0.063 0.937 9 N -0.299 5.299 10 C 0.082 3.918 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.185 1.185 17 H -0.202 1.202 18 H -0.204 1.204 19 H 0.128 0.872 20 H 0.111 0.889 21 H 0.101 0.899 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.151 0.849 27 H -0.028 1.028 28 H 0.019 0.981 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.968 -1.011 6.636 15.497 hybrid contribution 0.058 0.013 -0.946 0.948 sum -13.910 -0.998 5.690 15.062 Atomic orbital electron populations 1.23367 0.90510 1.07307 1.05927 1.87266 1.11556 1.13256 1.97840 1.25068 0.98966 0.92301 1.02716 0.86649 1.23022 0.98936 0.98937 0.93668 1.22949 0.98383 0.97848 0.96864 1.23005 0.92579 0.96555 0.91944 0.93673 1.60844 1.05316 1.61195 1.02567 1.19219 0.84783 0.91880 0.95926 1.21567 0.95255 1.39230 1.01334 0.91606 1.26000 0.96255 0.95305 1.02282 1.70114 1.03034 1.45347 1.39026 0.85232 0.78398 0.77986 0.78347 1.18507 1.20231 1.20351 0.87185 0.88942 0.89852 0.88837 0.88128 0.91404 0.89074 0.84890 1.02762 0.98116 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.76 113.37 1.22 -0.61 15 2 S -0.33 -9.27 22.18 -56.49 -1.25 -10.53 15 3 C -0.06 -1.73 3.88 31.12 0.12 -1.61 15 4 H 0.12 3.08 8.14 -2.39 -0.02 3.06 15 5 C -0.11 -2.45 7.67 31.12 0.24 -2.21 15 6 C -0.12 -3.60 7.88 31.12 0.25 -3.36 15 7 C 0.07 2.63 3.69 45.44 0.17 2.80 15 8 H 0.05 1.91 7.85 -2.39 -0.02 1.89 15 9 N -0.67 -29.84 6.53 -492.85 -3.22 -33.06 15 10 C 0.21 11.74 5.30 85.56 0.45 12.19 15 11 C -0.54 -31.40 9.32 25.60 0.24 -31.16 15 12 H 0.07 3.73 7.81 -2.91 -0.02 3.71 15 13 C 0.00 -0.02 5.46 84.65 0.46 0.44 15 14 N -0.94 -57.88 13.29 21.45 0.28 -57.59 15 15 Si 0.98 45.03 29.54 68.60 2.03 47.06 15 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 15 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 19 H 0.11 1.66 8.14 -2.39 -0.02 1.64 15 20 H 0.09 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.08 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.09 2.12 8.10 -2.39 -0.02 2.10 15 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.09 2.73 8.14 -2.38 -0.02 2.71 15 26 H 0.33 14.42 8.57 -89.70 -0.77 13.66 15 27 H -0.05 -2.77 8.13 -2.39 -0.02 -2.79 15 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 Total: -1.00 -66.24 260.72 1.33 -64.91 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.35 Total: 12.73 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 3.15 Total: -23.51 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -2.94 Total: -90.66 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.25 Total: -10.53 kcal Total: -66.24 1.33 -64.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702427829.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.878 kcal (2) G-P(sol) polarization free energy of solvation -66.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds