Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.53919 * 324.82142 * 11 10 9 13 13 C 1.53173 * 109.54434 * 84.99721 * 11 10 9 14 14 C 1.53096 * 109.16233 * 176.84844 * 13 11 10 15 15 O 1.42904 * 109.41534 * 302.39230 * 14 13 11 16 16 C 1.42906 * 114.09658 * 61.15401 * 15 14 13 17 17 C 1.53090 * 109.41602 * 298.84420 * 16 15 14 18 18 H 1.09007 * 109.51848 * 177.51285 * 17 16 15 19 19 O 1.42896 * 109.52377 * 297.70446 * 17 16 15 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.00894 * 111.00555 * 56.04687 * 10 9 7 24 24 H 1.09001 * 109.52223 * 296.75160 * 13 11 10 25 25 H 1.08996 * 109.52602 * 56.94407 * 13 11 10 26 26 H 1.09008 * 109.47943 * 62.37241 * 14 13 11 27 27 H 1.08998 * 109.47945 * 182.39312 * 14 13 11 28 28 H 1.09000 * 109.47804 * 58.82751 * 16 15 14 29 29 H 1.09000 * 109.47780 * 178.84710 * 16 15 14 30 30 H 0.96707 * 113.99648 * 299.68872 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5930 -4.8301 0.5751 13 6 1.1508 -5.2907 -1.4566 14 6 0.4923 -6.6728 -1.4610 15 8 1.3785 -7.6231 -0.8663 16 6 1.7074 -7.3414 0.4956 17 6 2.4148 -5.9863 0.5785 18 1 2.6270 -5.7494 1.6211 19 8 3.6376 -6.0399 -0.1589 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8403 -3.5522 0.7714 24 1 0.4591 -4.5564 -1.8695 25 1 2.0580 -5.3176 -2.0602 26 1 -0.4360 -6.6349 -0.8907 27 1 0.2765 -6.9694 -2.4874 28 1 0.7951 -7.3124 1.0913 29 1 2.3671 -8.1200 0.8787 30 1 4.2627 -6.7034 0.1639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706968804.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = -99.356302 kcal Electronic energy + Delta-G solvation = -13376.988146 eV Core-core repulsion = 10979.041192 eV Total energy + Delta-G solvation = -2397.946954 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50338 -36.06134 -35.04885 -32.65319 -30.63292 -29.78329 -26.46099 -23.61848 -23.25835 -21.27512 -19.68895 -17.09889 -16.60372 -15.98227 -15.57440 -15.02558 -14.75587 -14.36032 -13.61624 -13.02243 -12.97941 -12.54063 -12.05757 -11.87214 -11.39220 -11.08730 -10.88245 -10.67695 -10.61198 -10.21788 -9.96730 -9.78401 -9.24866 -9.01218 -8.47229 -7.24683 -6.02830 -4.04304 3.33152 3.38603 3.42847 3.93720 4.42275 4.48566 4.85370 4.88796 5.13614 5.25084 5.33224 5.46219 5.53292 5.58879 5.68487 5.97256 6.01404 6.22785 6.39429 6.82343 7.24165 7.28344 7.40453 7.80018 7.91587 8.14485 8.43253 8.63573 9.05454 9.60577 11.08367 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.064840 B = 0.007646 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.726881 B = 3661.247257 C = 3886.400445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.674 5.674 11 C 0.094 3.906 12 H 0.044 0.956 13 C -0.138 4.138 14 C 0.061 3.939 15 O -0.378 6.378 16 C 0.032 3.968 17 C 0.071 3.929 18 H 0.057 0.943 19 O -0.535 6.535 20 H 0.261 0.739 21 H -0.016 1.016 22 H 0.028 0.972 23 H 0.330 0.670 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -13.121 1.616 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.305 5.305 11 C -0.017 4.017 12 H 0.062 0.938 13 C -0.177 4.177 14 C -0.016 4.016 15 O -0.297 6.297 16 C -0.046 4.046 17 C 0.011 3.989 18 H 0.075 0.925 19 O -0.338 6.338 20 H 0.071 0.929 21 H 0.001 0.999 22 H 0.046 0.954 23 H 0.148 0.852 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.786 -12.638 0.494 12.774 hybrid contribution 0.101 0.751 1.447 1.633 sum 1.887 -11.887 1.941 12.192 Atomic orbital electron populations 1.69966 1.06082 1.26757 1.51073 1.24998 0.94894 0.99392 0.95366 0.86466 0.79664 0.82919 0.78157 1.20593 1.21324 1.19849 1.21200 0.93582 0.90208 1.50121 0.91916 1.19632 0.90615 0.87572 0.95568 1.60559 1.20544 1.00164 1.49213 1.21490 0.94073 0.90247 0.95881 0.93802 1.22118 1.02173 0.95517 0.97858 1.22675 0.91505 0.89203 0.98251 1.87886 1.66973 1.49401 1.25393 1.23281 0.99555 0.97312 0.84444 1.22652 0.86250 0.95216 0.94806 0.92516 1.86741 1.27106 1.61186 1.58815 0.92945 0.99852 0.95376 0.85214 0.90848 0.89799 0.93670 0.88948 0.92689 0.88988 0.78955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.86 9.32 -34.44 -0.32 -15.18 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.19 5.16 5.24 -4.98 -0.03 5.13 16 10 N -0.67 -15.13 6.11 -107.80 -0.66 -15.79 16 11 C 0.09 1.73 2.36 -67.53 -0.16 1.57 16 12 H 0.04 0.83 7.81 -51.93 -0.41 0.42 16 13 C -0.14 -2.44 5.47 -26.59 -0.15 -2.59 16 14 C 0.06 0.87 6.84 37.21 0.25 1.13 16 15 O -0.38 -5.62 10.70 -42.72 -0.46 -6.08 16 16 C 0.03 0.40 6.49 37.20 0.24 0.64 16 17 C 0.07 1.04 3.16 -26.59 -0.08 0.96 16 18 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 19 O -0.54 -8.25 12.54 -42.72 -0.54 -8.78 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H -0.02 -0.46 8.06 -51.93 -0.42 -0.87 16 22 H 0.03 0.81 7.51 -51.93 -0.39 0.42 16 23 H 0.33 7.18 8.36 -39.29 -0.33 6.85 16 24 H 0.07 1.37 7.55 -51.93 -0.39 0.98 16 25 H 0.08 1.63 7.83 -51.93 -0.41 1.22 16 26 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.37 3.78 9.09 45.56 0.41 4.19 16 LS Contribution 250.87 15.07 3.78 3.78 Total: -1.00 -32.46 250.87 -6.08 -38.54 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.59 Total: 4.57 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.34 Total: -6.85 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.08 Total: -42.19 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.99 Total: -14.86 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.46 -6.08 -38.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706968804.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.820 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds