Wall clock time and date at job start Mon Mar 30 2020 02:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.53919 * 324.82142 * 11 10 9 13 13 C 1.53173 * 109.54434 * 84.99721 * 11 10 9 14 14 C 1.53096 * 109.16233 * 176.84844 * 13 11 10 15 15 O 1.42904 * 109.41534 * 302.39230 * 14 13 11 16 16 C 1.42906 * 114.09658 * 61.15401 * 15 14 13 17 17 C 1.53090 * 109.41602 * 298.84420 * 16 15 14 18 18 H 1.09007 * 109.51848 * 177.51285 * 17 16 15 19 19 O 1.42896 * 109.52377 * 297.70446 * 17 16 15 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.00894 * 111.00555 * 56.04687 * 10 9 7 24 24 H 1.09001 * 109.52223 * 296.75160 * 13 11 10 25 25 H 1.08996 * 109.52602 * 56.94407 * 13 11 10 26 26 H 1.09008 * 109.47943 * 62.37241 * 14 13 11 27 27 H 1.08998 * 109.47945 * 182.39312 * 14 13 11 28 28 H 1.09000 * 109.47804 * 58.82751 * 16 15 14 29 29 H 1.09000 * 109.47780 * 178.84710 * 16 15 14 30 30 H 0.96707 * 113.99648 * 299.68872 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5930 -4.8301 0.5751 13 6 1.1508 -5.2907 -1.4566 14 6 0.4923 -6.6728 -1.4610 15 8 1.3785 -7.6231 -0.8663 16 6 1.7074 -7.3414 0.4956 17 6 2.4148 -5.9863 0.5785 18 1 2.6270 -5.7494 1.6211 19 8 3.6376 -6.0399 -0.1589 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8403 -3.5522 0.7714 24 1 0.4591 -4.5564 -1.8695 25 1 2.0580 -5.3176 -2.0602 26 1 -0.4360 -6.6349 -0.8907 27 1 0.2765 -6.9694 -2.4874 28 1 0.7951 -7.3124 1.0913 29 1 2.3671 -8.1200 0.8787 30 1 4.2627 -6.7034 0.1639 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706968804.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:39 Heat of formation + Delta-G solvation = -126.566565 kcal Electronic energy + Delta-G solvation = -13378.168071 eV Core-core repulsion = 10979.041192 eV Total energy + Delta-G solvation = -2399.126880 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.72382 -37.36658 -36.62514 -34.70186 -32.21527 -31.03508 -28.40590 -25.20054 -24.51541 -23.15794 -21.05414 -18.67688 -18.21598 -17.28600 -16.90650 -16.74029 -16.16918 -15.85843 -15.17391 -14.65567 -14.56161 -13.98642 -13.75264 -13.59170 -12.96308 -12.72203 -12.61807 -12.31173 -12.14372 -11.97283 -11.42926 -11.27039 -11.10082 -10.68423 -10.24985 -9.11362 -8.25141 -6.36380 1.39349 1.41639 1.52867 2.38235 2.88256 3.07813 3.24636 3.54872 3.77474 3.87252 3.96969 4.23747 4.36786 4.48651 4.61493 4.64990 4.72040 4.91100 4.98088 5.08534 5.22577 5.35903 5.60828 6.00904 6.17566 6.44002 6.70069 6.86577 7.02911 7.34622 8.86416 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.064840 B = 0.007646 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.726881 B = 3661.247257 C = 3886.400445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.677 5.677 11 C 0.082 3.918 12 H 0.040 0.960 13 C -0.134 4.134 14 C 0.068 3.932 15 O -0.388 6.388 16 C 0.033 3.967 17 C 0.077 3.923 18 H 0.074 0.926 19 O -0.560 6.560 20 H 0.266 0.734 21 H -0.039 1.039 22 H -0.001 1.001 23 H 0.334 0.666 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -13.838 2.168 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.308 5.308 11 C -0.028 4.028 12 H 0.058 0.942 13 C -0.173 4.173 14 C -0.009 4.009 15 O -0.307 6.307 16 C -0.045 4.045 17 C 0.017 3.983 18 H 0.091 0.909 19 O -0.367 6.367 20 H 0.075 0.925 21 H -0.022 1.022 22 H 0.017 0.983 23 H 0.152 0.848 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.660 -13.395 1.055 13.697 hybrid contribution -0.161 0.925 1.277 1.585 sum 2.499 -12.470 2.333 12.930 Atomic orbital electron populations 1.70087 1.07752 1.28053 1.51411 1.25967 0.95847 1.03401 0.94480 0.85309 0.78516 0.77855 0.78468 1.19929 1.20381 1.18784 1.21542 0.93726 0.91548 1.50782 0.92047 1.19249 0.90559 0.88937 0.93019 1.60447 1.20022 1.00891 1.49441 1.21674 0.94781 0.89602 0.96727 0.94249 1.22054 1.00973 0.97394 0.96874 1.22642 0.91490 0.86971 0.99798 1.87879 1.66996 1.49100 1.26681 1.23467 1.00638 0.96719 0.83636 1.22560 0.85781 0.95067 0.94889 0.90871 1.86674 1.27832 1.62616 1.59566 0.92543 1.02176 0.98258 0.84821 0.93081 0.91852 0.92318 0.87186 0.91315 0.85506 0.76294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.73 9.32 25.60 0.24 -31.49 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.66 5.24 85.56 0.45 12.11 16 10 N -0.68 -31.00 6.11 -494.96 -3.03 -34.02 16 11 C 0.08 3.04 2.36 45.03 0.11 3.15 16 12 H 0.04 1.50 7.81 -2.39 -0.02 1.48 16 13 C -0.13 -4.81 5.47 30.68 0.17 -4.64 16 14 C 0.07 1.86 6.84 72.01 0.49 2.35 16 15 O -0.39 -10.53 10.70 -141.82 -1.52 -12.05 16 16 C 0.03 0.71 6.49 72.01 0.47 1.18 16 17 C 0.08 2.12 3.16 30.68 0.10 2.21 16 18 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 19 O -0.56 -16.25 12.54 -141.82 -1.78 -18.03 16 20 H 0.27 15.20 8.31 -92.70 -0.77 14.42 16 21 H -0.04 -2.31 8.06 -2.38 -0.02 -2.33 16 22 H 0.00 -0.04 7.51 -2.39 -0.02 -0.06 16 23 H 0.33 14.63 8.36 -89.70 -0.75 13.88 16 24 H 0.05 2.00 7.55 -2.39 -0.02 1.98 16 25 H 0.06 2.50 7.83 -2.39 -0.02 2.48 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.39 7.02 9.09 -74.05 -0.67 6.34 16 Total: -1.00 -70.17 250.87 -1.81 -71.99 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -0.29 Total: 16.38 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 2.48 Total: -14.58 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -2.74 Total: -90.86 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -3.30 Total: -30.08 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.17 -1.81 -71.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706968804.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.578 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds