Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.54176 * 324.81949 * 11 10 9 13 13 C 1.53177 * 109.54468 * 84.99805 * 11 10 9 14 14 C 1.53091 * 109.16324 * 176.84716 * 13 11 10 15 15 O 1.42908 * 109.41499 * 302.39397 * 14 13 11 16 16 C 1.42899 * 114.09626 * 61.15594 * 15 14 13 17 17 C 1.53088 * 109.41922 * 298.84206 * 16 15 14 18 18 H 1.09005 * 109.52393 * 297.70617 * 17 16 15 19 19 O 1.42900 * 109.52635 * 177.51964 * 17 16 15 20 20 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 22 22 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 23 23 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 24 24 H 1.08996 * 109.52364 * 296.75442 * 13 11 10 25 25 H 1.09000 * 109.52094 * 56.87874 * 13 11 10 26 26 H 1.08999 * 109.48114 * 62.37178 * 14 13 11 27 27 H 1.08997 * 109.48359 * 182.41266 * 14 13 11 28 28 H 1.09004 * 109.48197 * 58.83125 * 16 15 14 29 29 H 1.09008 * 109.47854 * 178.84901 * 16 15 14 30 30 H 0.96698 * 114.00268 * 60.31462 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 1 0.5932 -4.8275 0.5915 13 6 1.1508 -5.2971 -1.4383 14 6 0.4923 -6.6792 -1.4365 15 8 1.3786 -7.6269 -0.8375 16 6 1.7076 -7.3391 0.5230 17 6 2.4149 -5.9836 0.5999 18 1 3.3477 -6.0270 0.0375 19 8 2.6934 -5.6670 1.9652 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5572 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 2.8405 -3.5487 0.7819 24 1 0.4592 -4.5647 -1.8545 25 1 2.0579 -5.3256 -2.0421 26 1 -0.4358 -6.6389 -0.8664 27 1 0.2768 -6.9806 -2.4615 28 1 0.7953 -7.3075 1.1187 29 1 2.3674 -8.1160 0.9095 30 1 3.2657 -6.3079 2.4088 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706968806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = -103.478884 kcal Electronic energy + Delta-G solvation = -13319.524989 eV Core-core repulsion = 10921.399266 eV Total energy + Delta-G solvation = -2398.125723 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.51123 -36.47144 -35.09876 -32.67530 -30.66937 -29.67180 -26.46094 -23.65065 -23.16630 -21.27387 -19.86881 -17.31940 -16.67086 -16.10493 -15.72672 -14.94052 -14.78722 -14.20760 -13.82333 -13.12712 -12.92752 -12.45551 -12.17260 -11.87680 -11.62202 -11.07608 -10.83295 -10.71977 -10.63738 -10.28883 -10.15290 -9.76639 -9.31926 -9.07798 -8.45881 -7.29120 -6.00847 -4.02487 3.35509 3.38711 3.42246 3.78749 4.42459 4.45573 4.83072 4.86849 5.04298 5.28765 5.33190 5.34990 5.47625 5.67274 5.76489 5.97513 5.99370 6.16285 6.39939 6.61781 7.15096 7.27768 7.46210 7.72636 7.80802 8.15154 8.44287 8.64924 9.06559 9.62003 11.10398 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.058140 B = 0.007768 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.476594 B = 3603.508221 C = 3876.053549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.682 5.682 11 C 0.093 3.907 12 H 0.041 0.959 13 C -0.141 4.141 14 C 0.058 3.942 15 O -0.381 6.381 16 C 0.035 3.965 17 C 0.069 3.931 18 H 0.070 0.930 19 O -0.557 6.557 20 H 0.262 0.738 21 H 0.027 0.973 22 H -0.014 1.014 23 H 0.338 0.662 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 -13.308 0.445 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.018 4.018 12 H 0.059 0.941 13 C -0.180 4.180 14 C -0.019 4.019 15 O -0.300 6.300 16 C -0.043 4.043 17 C 0.009 3.991 18 H 0.088 0.912 19 O -0.362 6.362 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.004 0.996 23 H 0.156 0.844 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.158 -12.797 -0.478 12.987 hybrid contribution 0.252 0.702 1.180 1.396 sum 2.410 -12.096 0.701 12.353 Atomic orbital electron populations 1.69951 1.06081 1.26863 1.50956 1.24991 0.94891 0.99357 0.95367 0.86528 0.79409 0.82620 0.78643 1.20172 1.21335 1.20260 1.21151 0.93490 0.90263 1.50298 0.92041 1.19580 0.90615 0.87373 0.95586 1.60745 1.20956 1.00414 1.49269 1.21448 0.95283 0.90593 0.94446 0.94075 1.22229 1.02263 0.96121 0.97367 1.22723 0.91902 0.88875 0.98414 1.87887 1.66956 1.49631 1.25542 1.23281 0.99893 0.97020 0.84139 1.22716 0.98840 0.94486 0.83018 0.91216 1.86600 1.72284 1.52814 1.24532 0.92884 0.95531 0.99610 0.84363 0.89936 0.90383 0.93213 0.88610 0.92628 0.89092 0.77952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -15.01 9.32 -34.44 -0.32 -15.33 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.20 5.31 5.24 -4.97 -0.03 5.28 16 10 N -0.68 -15.45 6.30 -107.79 -0.68 -16.13 16 11 C 0.09 1.75 2.28 -67.53 -0.15 1.59 16 12 H 0.04 0.84 7.81 -51.93 -0.41 0.44 16 13 C -0.14 -2.34 5.62 -26.59 -0.15 -2.49 16 14 C 0.06 0.79 6.84 37.20 0.25 1.04 16 15 O -0.38 -5.43 10.77 -35.23 -0.38 -5.81 16 16 C 0.03 0.44 6.47 37.20 0.24 0.68 16 17 C 0.07 1.04 3.18 -26.59 -0.08 0.96 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 19 O -0.56 -8.19 12.62 -35.23 -0.44 -8.64 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.03 0.76 7.51 -51.93 -0.39 0.37 16 22 H -0.01 -0.41 8.06 -51.93 -0.42 -0.83 16 23 H 0.34 7.66 7.78 -39.29 -0.31 7.36 16 24 H 0.08 1.46 7.55 -51.93 -0.39 1.07 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 30 H 0.37 3.42 9.09 45.56 0.41 3.83 16 LS Contribution 251.00 15.07 3.78 3.78 Total: -1.00 -32.31 251.00 -5.92 -38.23 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -3.58 Total: 4.84 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.34 Total: -6.76 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.06 Total: -42.76 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.82 Total: -14.44 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.31 -5.92 -38.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706968806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.252 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds