Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48500 * 109.46802 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47344 * 119.99497 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.54176 * 324.81949 * 11 10 9 13 13 C 1.53177 * 109.54468 * 84.99805 * 11 10 9 14 14 C 1.53091 * 109.16324 * 176.84716 * 13 11 10 15 15 O 1.42908 * 109.41499 * 302.39397 * 14 13 11 16 16 C 1.42899 * 114.09626 * 61.15594 * 15 14 13 17 17 C 1.53088 * 109.41922 * 298.84206 * 16 15 14 18 18 H 1.09005 * 109.52393 * 297.70617 * 17 16 15 19 19 O 1.42900 * 109.52635 * 177.51964 * 17 16 15 20 20 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 22 22 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 23 23 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 24 24 H 1.08996 * 109.52364 * 296.75442 * 13 11 10 25 25 H 1.09000 * 109.52094 * 56.87874 * 13 11 10 26 26 H 1.08999 * 109.48114 * 62.37178 * 14 13 11 27 27 H 1.08997 * 109.48359 * 182.41266 * 14 13 11 28 28 H 1.09004 * 109.48197 * 58.83125 * 16 15 14 29 29 H 1.09008 * 109.47854 * 178.84901 * 16 15 14 30 30 H 0.96698 * 114.00268 * 60.31462 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 1 0.5932 -4.8275 0.5915 13 6 1.1508 -5.2971 -1.4383 14 6 0.4923 -6.6792 -1.4365 15 8 1.3786 -7.6269 -0.8375 16 6 1.7076 -7.3391 0.5230 17 6 2.4149 -5.9836 0.5999 18 1 3.3477 -6.0270 0.0375 19 8 2.6934 -5.6670 1.9652 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5572 -0.8896 22 1 0.6240 -2.5568 0.8903 23 1 2.8405 -3.5487 0.7819 24 1 0.4592 -4.5647 -1.8545 25 1 2.0579 -5.3256 -2.0421 26 1 -0.4358 -6.6389 -0.8664 27 1 0.2768 -6.9806 -2.4615 28 1 0.7953 -7.3075 1.1187 29 1 2.3674 -8.1160 0.9095 30 1 3.2657 -6.3079 2.4088 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706968806.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = -130.997006 kcal Electronic energy + Delta-G solvation = -13320.718264 eV Core-core repulsion = 10921.399266 eV Total energy + Delta-G solvation = -2399.318998 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.73511 -37.68335 -36.76561 -34.73309 -32.27995 -30.90625 -28.42794 -25.24623 -24.40289 -23.19361 -21.24259 -18.69722 -18.48376 -17.29728 -17.15320 -16.73339 -16.20768 -15.76937 -15.36514 -14.70322 -14.27044 -14.22643 -13.67646 -13.49821 -13.28120 -12.73968 -12.71830 -12.34599 -12.16249 -12.01296 -11.44080 -11.41074 -11.12634 -10.68408 -10.43177 -9.21921 -8.25249 -6.37217 1.39207 1.43538 1.51630 2.38130 2.73270 3.07557 3.27100 3.42247 3.68858 3.80563 4.09029 4.18339 4.21679 4.45043 4.60798 4.68308 4.71572 4.89709 4.98040 5.07960 5.19583 5.26599 5.58635 5.98433 6.08166 6.39327 6.65418 6.82518 6.88319 7.33613 8.86446 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.058140 B = 0.007768 C = 0.007222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.476594 B = 3603.508221 C = 3876.053549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.212 3.788 10 N -0.679 5.679 11 C 0.083 3.917 12 H 0.018 0.982 13 C -0.137 4.137 14 C 0.065 3.935 15 O -0.385 6.385 16 C 0.039 3.961 17 C 0.079 3.921 18 H 0.073 0.927 19 O -0.577 6.577 20 H 0.266 0.734 21 H 0.003 0.997 22 H -0.048 1.048 23 H 0.338 0.662 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.122 0.878 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 -14.004 0.461 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.310 5.310 11 C -0.028 4.028 12 H 0.036 0.964 13 C -0.176 4.176 14 C -0.012 4.012 15 O -0.304 6.304 16 C -0.039 4.039 17 C 0.019 3.981 18 H 0.091 0.909 19 O -0.386 6.386 20 H 0.075 0.925 21 H 0.021 0.979 22 H -0.030 1.030 23 H 0.155 0.845 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.343 -13.536 -0.453 13.950 hybrid contribution -0.126 0.872 1.211 1.498 sum 3.217 -12.663 0.758 13.088 Atomic orbital electron populations 1.70085 1.07860 1.28182 1.51269 1.26003 0.95860 1.03529 0.94383 0.85330 0.78096 0.77329 0.79207 1.19144 1.20516 1.19143 1.21509 0.93784 0.91457 1.51039 0.91836 1.19200 0.90564 0.88972 0.92797 1.60663 1.20178 1.01044 1.49097 1.21670 0.95053 0.90022 0.96044 0.96419 1.22184 1.02005 0.97766 0.95635 1.22729 0.91521 0.86826 1.00143 1.87893 1.66933 1.49345 1.26229 1.23377 1.00403 0.96435 0.83667 1.22533 0.98237 0.94117 0.83183 0.90863 1.86545 1.73247 1.54455 1.24333 0.92508 0.97885 1.03034 0.84454 0.92001 0.90509 0.92744 0.86014 0.92618 0.85361 0.74985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.98 45.30 29.54 68.60 2.03 47.32 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.54 -32.17 9.32 25.60 0.24 -31.93 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 12.07 5.24 85.55 0.45 12.52 16 10 N -0.68 -31.53 6.30 -494.95 -3.12 -34.65 16 11 C 0.08 3.14 2.28 45.03 0.10 3.24 16 12 H 0.02 0.76 7.81 -2.39 -0.02 0.74 16 13 C -0.14 -4.57 5.62 30.68 0.17 -4.40 16 14 C 0.06 1.66 6.84 72.01 0.49 2.15 16 15 O -0.39 -9.93 10.77 -148.98 -1.60 -11.53 16 16 C 0.04 0.88 6.47 72.01 0.47 1.35 16 17 C 0.08 2.27 3.18 30.68 0.10 2.36 16 18 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 19 O -0.58 -16.11 12.62 -148.98 -1.88 -17.99 16 20 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 21 H 0.00 0.19 7.51 -2.39 -0.02 0.17 16 22 H -0.05 -2.98 8.06 -2.39 -0.02 -3.00 16 23 H 0.34 15.55 7.78 -89.69 -0.70 14.85 16 24 H 0.06 2.28 7.55 -2.39 -0.02 2.26 16 25 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.40 6.29 9.09 -74.06 -0.67 5.62 16 Total: -1.00 -70.22 251.00 -2.04 -72.26 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -0.23 Total: 16.41 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 2.48 Total: -14.22 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -2.83 Total: -92.25 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -3.48 Total: -29.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.22 -2.04 -72.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706968806.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.732 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds