Wall clock time and date at job start Mon Mar 30 2020 02:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81401 * 103.00065 * 2 1 4 4 C 1.53779 * 113.69284 * 85.93585 * 3 2 1 5 5 C 1.53778 * 87.08277 * 139.99401 * 4 3 2 6 6 N 1.46497 * 113.61645 * 89.11440 * 5 4 3 7 7 C 1.46507 * 119.99751 * 149.00940 * 6 5 4 8 8 C 1.36933 * 120.00272 * 329.01429 * 6 5 4 9 9 H 1.08010 * 119.99734 * 11.70502 * 8 6 5 10 10 C 1.38813 * 120.00518 * 191.70776 * 8 6 5 11 11 N 1.31626 * 119.99526 * 350.04770 * 10 8 6 12 12 Si 1.86791 * 120.00272 * 170.04970 * 10 8 6 13 13 H 1.48505 * 109.47344 * 60.00137 * 12 10 8 14 14 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47352 * 299.99608 * 12 10 8 16 16 C 1.53778 * 113.61532 * 183.47277 * 3 2 1 17 17 H 1.08998 * 109.47004 * 59.99724 * 1 2 3 18 18 H 1.08999 * 109.46902 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46761 * 300.00028 * 1 2 3 20 20 H 1.09004 * 112.84873 * 314.67118 * 3 2 1 21 21 H 1.09000 * 113.61341 * 254.54321 * 4 3 2 22 22 H 1.08996 * 113.61277 * 25.43739 * 4 3 2 23 23 H 1.08995 * 113.61538 * 220.02453 * 5 4 3 24 24 H 1.08997 * 109.47071 * 354.46068 * 7 6 5 25 25 H 1.09001 * 109.46697 * 114.46101 * 7 6 5 26 26 H 1.09002 * 109.46702 * 234.45469 * 7 6 5 27 27 H 0.96994 * 119.99621 * 179.97438 * 11 10 8 28 28 H 1.09003 * 113.60996 * 334.48239 * 16 3 2 29 29 H 1.08997 * 113.61784 * 105.38469 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 2.2639 2.3921 1.4046 5 6 3.4964 3.1808 0.9316 6 7 3.1678 4.4678 0.3137 7 6 4.1001 5.5926 0.4243 8 6 1.9894 4.6196 -0.3670 9 1 1.2213 3.8640 -0.2921 10 6 1.7820 5.7445 -1.1534 11 7 2.6252 6.7535 -1.0941 12 14 0.3063 5.8264 -2.2958 13 1 -0.9424 5.7094 -1.5005 14 1 0.3119 7.1230 -3.0196 15 1 0.3759 4.7121 -3.2749 16 6 3.7311 2.0514 -0.0853 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.6293 2.3388 -0.7144 21 1 1.4024 3.0212 1.6285 22 1 2.4819 1.6742 2.1953 23 1 4.2800 3.2596 1.6851 24 1 4.9272 5.3161 1.0781 25 1 4.4861 5.8430 -0.5639 26 1 3.5804 6.4556 0.8407 27 1 2.4804 7.5394 -1.6439 28 1 4.3503 1.2403 0.2980 29 1 4.0542 2.4055 -1.0643 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707294736.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:50 Heat of formation + Delta-G solvation = 53.234550 kcal Electronic energy + Delta-G solvation = -11523.155213 eV Core-core repulsion = 9574.577965 eV Total energy + Delta-G solvation = -1948.577247 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.47485 -33.90553 -30.48154 -28.67822 -26.08433 -24.94970 -24.79484 -21.69320 -18.61263 -16.93422 -15.74511 -15.25263 -14.27064 -14.14122 -13.39698 -13.15100 -12.89237 -12.79950 -12.24938 -11.83792 -11.36850 -11.20910 -10.77943 -10.72079 -10.40862 -10.14148 -10.09264 -9.71388 -9.50644 -9.10616 -8.49413 -7.28851 -6.90634 -5.72812 -3.13121 2.19693 3.05130 3.33995 3.40126 3.40818 4.43498 5.16159 5.21069 5.34331 5.37159 5.40469 5.50044 5.87612 5.91721 5.96491 6.29161 6.33491 6.56539 6.69924 6.81331 6.86480 6.98085 7.59893 7.72102 7.89946 8.34487 9.22016 9.86439 10.30506 11.27879 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.013061 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.548600 B = 2143.242487 C = 2784.786934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.302 6.302 3 C -0.061 4.061 4 C -0.144 4.144 5 C 0.171 3.829 6 N -0.591 5.591 7 C 0.169 3.831 8 C -0.254 4.254 9 H 0.080 0.920 10 C 0.001 3.999 11 N -0.911 5.911 12 Si 0.900 3.100 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.284 1.284 16 C -0.140 4.140 17 H 0.073 0.927 18 H 0.090 0.910 19 H 0.073 0.927 20 H 0.121 0.879 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.067 0.933 24 H -0.006 1.006 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.252 0.748 28 H 0.072 0.928 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 -8.514 2.945 9.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.074 6.074 3 C -0.189 4.189 4 C -0.186 4.186 5 C 0.059 3.941 6 N -0.312 5.312 7 C 0.025 3.975 8 C -0.383 4.383 9 H 0.097 0.903 10 C -0.196 4.196 11 N -0.557 5.557 12 Si 0.729 3.271 13 H -0.211 1.211 14 H -0.214 1.214 15 H -0.210 1.210 16 C -0.182 4.182 17 H 0.092 0.908 18 H 0.109 0.891 19 H 0.092 0.908 20 H 0.139 0.861 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.085 0.915 24 H 0.012 0.988 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.535 -9.189 2.827 9.629 hybrid contribution -1.780 1.028 -0.819 2.213 sum -2.315 -8.161 2.008 8.717 Atomic orbital electron populations 1.23229 0.94940 1.05294 1.04814 1.86484 1.07043 1.16029 1.97854 1.25111 1.02143 0.89307 1.02291 1.23689 1.01529 0.98901 0.94446 1.21085 0.94573 0.85245 0.93212 1.43844 1.20077 1.05677 1.61614 1.21074 0.89265 0.88879 0.98268 1.19282 0.93285 1.05030 1.20669 0.90264 1.24944 0.98415 0.96762 0.99464 1.70210 1.37453 1.06079 1.41970 0.86401 0.82153 0.77118 0.81399 1.21090 1.21423 1.21022 1.23589 0.92072 0.99669 1.02895 0.90837 0.89092 0.90764 0.86137 0.90823 0.90227 0.91461 0.98791 0.94039 0.93728 0.93761 0.90994 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.76 101.05 1.09 -0.48 15 2 S -0.30 -5.06 22.18 -107.50 -2.38 -7.44 15 3 C -0.06 -1.15 3.63 -25.92 -0.09 -1.24 15 4 C -0.14 -2.66 6.88 -25.92 -0.18 -2.84 15 5 C 0.17 3.47 4.63 -67.12 -0.31 3.16 15 6 N -0.59 -14.56 3.16 -172.55 -0.54 -15.10 15 7 C 0.17 4.18 9.01 59.85 0.54 4.72 15 8 C -0.25 -6.70 8.22 -15.06 -0.12 -6.82 15 9 H 0.08 2.01 4.70 -52.48 -0.25 1.76 15 10 C 0.00 0.03 5.45 -17.43 -0.10 -0.06 15 11 N -0.91 -26.05 9.55 55.49 0.53 -25.52 15 12 Si 0.90 21.58 29.56 -169.99 -5.03 16.55 15 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 16 C -0.14 -2.65 7.38 -25.92 -0.19 -2.84 15 17 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 18 H 0.09 1.05 8.14 -51.92 -0.42 0.62 15 19 H 0.07 0.98 8.14 -51.92 -0.42 0.56 15 20 H 0.12 2.57 5.61 -51.93 -0.29 2.28 15 21 H 0.07 1.47 7.36 -51.93 -0.38 1.08 15 22 H 0.08 1.32 8.10 -51.93 -0.42 0.89 15 23 H 0.07 1.26 7.86 -51.93 -0.41 0.85 15 24 H -0.01 -0.14 7.74 -51.93 -0.40 -0.54 15 25 H 0.04 1.11 7.00 -51.93 -0.36 0.75 15 26 H 0.04 1.19 7.15 -51.93 -0.37 0.82 15 27 H 0.25 7.04 8.31 -40.82 -0.34 6.70 15 28 H 0.07 1.23 8.10 -51.93 -0.42 0.81 15 29 H 0.07 1.54 8.14 -51.93 -0.42 1.12 15 LS Contribution 246.23 15.07 3.71 3.71 Total: -1.00 -27.98 246.23 -7.21 -35.19 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.13 Total: -1.00 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 0.63 Total: -6.39 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.02 Total: -40.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 16 Polarization: -5.06 SS G_CDS: -2.38 Total: -7.44 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.98 -7.21 -35.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707294736.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.425 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds