Wall clock time and date at job start Mon Mar 30 2020 02:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 C 1.81401 * 103.00065 * 2 1 4 4 C 1.53779 * 113.69284 * 85.93585 * 3 2 1 5 5 C 1.53778 * 87.08277 * 139.99401 * 4 3 2 6 6 N 1.46497 * 113.61645 * 89.11440 * 5 4 3 7 7 C 1.46507 * 119.99751 * 149.00940 * 6 5 4 8 8 C 1.36933 * 120.00272 * 329.01429 * 6 5 4 9 9 H 1.08010 * 119.99734 * 11.70502 * 8 6 5 10 10 C 1.38813 * 120.00518 * 191.70776 * 8 6 5 11 11 N 1.31626 * 119.99526 * 350.04770 * 10 8 6 12 12 Si 1.86791 * 120.00272 * 170.04970 * 10 8 6 13 13 H 1.48505 * 109.47344 * 60.00137 * 12 10 8 14 14 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47352 * 299.99608 * 12 10 8 16 16 C 1.53778 * 113.61532 * 183.47277 * 3 2 1 17 17 H 1.08998 * 109.47004 * 59.99724 * 1 2 3 18 18 H 1.08999 * 109.46902 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46761 * 300.00028 * 1 2 3 20 20 H 1.09004 * 112.84873 * 314.67118 * 3 2 1 21 21 H 1.09000 * 113.61341 * 254.54321 * 4 3 2 22 22 H 1.08996 * 113.61277 * 25.43739 * 4 3 2 23 23 H 1.08995 * 113.61538 * 220.02453 * 5 4 3 24 24 H 1.08997 * 109.47071 * 354.46068 * 7 6 5 25 25 H 1.09001 * 109.46697 * 114.46101 * 7 6 5 26 26 H 1.09002 * 109.46702 * 234.45469 * 7 6 5 27 27 H 0.96994 * 119.99621 * 179.97438 * 11 10 8 28 28 H 1.09003 * 113.60996 * 334.48239 * 16 3 2 29 29 H 1.08997 * 113.61784 * 105.38469 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 2.2639 2.3921 1.4046 5 6 3.4964 3.1808 0.9316 6 7 3.1678 4.4678 0.3137 7 6 4.1001 5.5926 0.4243 8 6 1.9894 4.6196 -0.3670 9 1 1.2213 3.8640 -0.2921 10 6 1.7820 5.7445 -1.1534 11 7 2.6252 6.7535 -1.0941 12 14 0.3063 5.8264 -2.2958 13 1 -0.9424 5.7094 -1.5005 14 1 0.3119 7.1230 -3.0196 15 1 0.3759 4.7121 -3.2749 16 6 3.7311 2.0514 -0.0853 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.6293 2.3388 -0.7144 21 1 1.4024 3.0212 1.6285 22 1 2.4819 1.6742 2.1953 23 1 4.2800 3.2596 1.6851 24 1 4.9272 5.3161 1.0781 25 1 4.4861 5.8430 -0.5639 26 1 3.5804 6.4556 0.8407 27 1 2.4804 7.5394 -1.6439 28 1 4.3503 1.2403 0.2980 29 1 4.0542 2.4055 -1.0643 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707294736.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:50 Heat of formation + Delta-G solvation = 37.658397 kcal Electronic energy + Delta-G solvation = -11523.830645 eV Core-core repulsion = 9574.577965 eV Total energy + Delta-G solvation = -1949.252680 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.11303 -35.81207 -32.45896 -29.77971 -28.07525 -26.61912 -26.37149 -23.55872 -20.29354 -18.76660 -17.37071 -16.92957 -15.98664 -15.70558 -14.93845 -14.68467 -14.50968 -14.23573 -13.80538 -13.36211 -13.08725 -12.98695 -12.67785 -12.48182 -12.24177 -11.98463 -11.79293 -11.43451 -11.06544 -10.67923 -10.45575 -8.88920 -8.59757 -7.78515 -5.19513 0.91420 1.42342 1.45154 1.50460 1.73185 2.47551 3.28462 3.50804 3.74629 3.85154 4.23923 4.33092 4.35126 4.38407 4.75614 4.83484 4.86146 4.87897 5.02880 5.21561 5.24481 5.40387 5.55419 5.71004 5.86309 6.32412 7.17304 7.91613 8.30369 9.21323 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.013061 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.548600 B = 2143.242487 C = 2784.786934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.303 6.303 3 C -0.063 4.063 4 C -0.127 4.127 5 C 0.155 3.845 6 N -0.608 5.608 7 C 0.183 3.817 8 C -0.248 4.248 9 H 0.088 0.912 10 C -0.060 4.060 11 N -0.942 5.942 12 Si 0.957 3.043 13 H -0.276 1.276 14 H -0.295 1.295 15 H -0.281 1.281 16 C -0.128 4.128 17 H 0.072 0.928 18 H 0.117 0.883 19 H 0.080 0.920 20 H 0.092 0.908 21 H 0.057 0.943 22 H 0.107 0.893 23 H 0.088 0.912 24 H 0.027 0.973 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.244 0.756 28 H 0.097 0.903 29 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -10.556 3.644 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.075 6.075 3 C -0.191 4.191 4 C -0.168 4.168 5 C 0.045 3.955 6 N -0.329 5.329 7 C 0.038 3.962 8 C -0.377 4.377 9 H 0.106 0.894 10 C -0.253 4.253 11 N -0.591 5.591 12 Si 0.786 3.214 13 H -0.202 1.202 14 H -0.222 1.222 15 H -0.207 1.207 16 C -0.170 4.170 17 H 0.091 0.909 18 H 0.135 0.865 19 H 0.099 0.901 20 H 0.110 0.890 21 H 0.075 0.925 22 H 0.125 0.875 23 H 0.106 0.894 24 H 0.045 0.955 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.176 -11.276 3.542 11.877 hybrid contribution -1.583 1.539 -0.981 2.416 sum -2.759 -9.736 2.561 10.439 Atomic orbital electron populations 1.23349 0.92256 1.07155 1.05128 1.86436 1.09973 1.13230 1.97852 1.24812 1.01548 0.91062 1.01679 1.23581 0.99696 0.98600 0.94925 1.21392 0.96281 0.83937 0.93900 1.44072 1.19609 1.07305 1.61960 1.20758 0.89837 0.88473 0.97104 1.19640 0.94028 1.04487 1.19575 0.89443 1.25667 1.01218 0.97020 1.01387 1.70405 1.39282 1.06435 1.42948 0.85474 0.79758 0.76543 0.79631 1.20195 1.22167 1.20718 1.23432 0.92750 0.99650 1.01182 0.90934 0.86457 0.90096 0.89043 0.92458 0.87494 0.89423 0.95498 0.96897 0.96508 0.94648 0.88464 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 10.76 113.37 1.22 -1.45 15 2 S -0.30 -9.26 22.18 -56.49 -1.25 -10.51 15 3 C -0.06 -2.25 3.63 31.12 0.11 -2.14 15 4 C -0.13 -4.37 6.88 31.12 0.21 -4.16 15 5 C 0.16 6.01 4.63 45.52 0.21 6.23 15 6 N -0.61 -29.78 3.16 -699.82 -2.21 -31.99 15 7 C 0.18 9.12 9.01 127.77 1.15 10.27 15 8 C -0.25 -13.09 8.22 84.03 0.69 -12.40 15 9 H 0.09 4.41 4.70 -2.91 -0.01 4.39 15 10 C -0.06 -3.31 5.45 84.86 0.46 -2.84 15 11 N -0.94 -55.39 9.55 21.65 0.21 -55.18 15 12 Si 0.96 44.87 29.56 68.60 2.03 46.90 15 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 14 H -0.30 -14.06 7.11 99.48 0.71 -13.36 15 15 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 16 C -0.13 -4.63 7.38 31.12 0.23 -4.40 15 17 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 18 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 19 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.09 3.82 5.61 -2.38 -0.01 3.81 15 21 H 0.06 2.18 7.36 -2.39 -0.02 2.16 15 22 H 0.11 3.13 8.10 -2.39 -0.02 3.11 15 23 H 0.09 3.02 7.86 -2.39 -0.02 3.00 15 24 H 0.03 1.13 7.74 -2.39 -0.02 1.11 15 25 H 0.01 0.70 7.00 -2.39 -0.02 0.68 15 26 H 0.02 0.90 7.15 -2.39 -0.02 0.89 15 27 H 0.24 14.09 8.31 -92.71 -0.77 13.32 15 28 H 0.10 3.03 8.10 -2.39 -0.02 3.01 15 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 Total: -1.00 -59.74 246.23 4.18 -55.56 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.12 Total: 6.11 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.29 Total: -10.89 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -2.00 Total: -87.17 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.25 Total: -10.51 kcal Total: -59.74 4.18 -55.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707294736.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.219 kcal (2) G-P(sol) polarization free energy of solvation -59.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds