Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.51803 * 35.00499 * 11 10 9 13 13 C 1.53091 * 109.52230 * 274.87679 * 11 10 9 14 14 O 1.42904 * 109.41071 * 182.48435 * 13 11 10 15 15 C 1.42903 * 114.09743 * 61.16138 * 14 13 11 16 16 C 1.53095 * 109.41433 * 298.83823 * 15 14 13 17 17 C 1.53175 * 109.52025 * 155.12727 * 11 10 9 18 18 H 1.09001 * 109.54596 * 57.02196 * 17 11 10 19 19 O 1.42899 * 109.54527 * 296.75506 * 17 11 10 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.00908 * 110.99847 * 56.05051 * 10 9 7 24 24 H 1.09001 * 109.48174 * 302.46393 * 13 11 10 25 25 H 1.09000 * 109.47893 * 62.49248 * 13 11 10 26 26 H 1.09001 * 109.48310 * 58.82072 * 15 14 13 27 27 H 1.08999 * 109.48371 * 178.84467 * 15 14 13 28 28 H 1.09001 * 109.52502 * 177.51829 * 16 15 14 29 29 H 1.09000 * 109.52275 * 297.63997 * 16 15 14 30 30 H 0.96701 * 114.00500 * 180.02562 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 1 0.5919 -4.8263 -0.5889 13 6 1.1542 -5.2979 1.4380 14 8 0.5249 -6.5809 1.4412 15 6 1.3444 -7.6340 0.9297 16 6 1.7033 -7.3370 -0.5286 17 6 2.4126 -5.9816 -0.6071 18 1 3.3477 -6.0275 -0.0488 19 8 2.6847 -5.6615 -1.9730 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8406 -3.5487 0.7809 24 1 2.0643 -5.3380 2.0364 25 1 0.4739 -4.5581 1.8599 26 1 2.2570 -7.7046 1.5215 27 1 0.8011 -8.5773 0.9856 28 1 2.3643 -8.1166 -0.9072 29 1 0.7939 -7.3075 -1.1288 30 1 3.2548 -6.3014 -2.4210 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710906949.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -100.935717 kcal Electronic energy + Delta-G solvation = -13318.950957 eV Core-core repulsion = 10920.935514 eV Total energy + Delta-G solvation = -2398.015443 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.47475 -36.32557 -35.03207 -32.49132 -31.49445 -29.19557 -25.89485 -24.25647 -22.95109 -21.30527 -20.13305 -17.20591 -16.55331 -16.01987 -15.67954 -14.91707 -14.74872 -14.17431 -13.74614 -13.35479 -12.85928 -12.46152 -12.17487 -11.92901 -11.32929 -11.17905 -10.91462 -10.79845 -10.65214 -10.32016 -9.89065 -9.69077 -9.51487 -9.15235 -8.45626 -7.25059 -6.00580 -4.02696 3.35574 3.39274 3.42660 3.93498 4.42874 4.45829 4.77524 4.92564 5.02802 5.21722 5.34904 5.39112 5.45445 5.59759 5.68156 5.78613 5.86535 6.07113 6.21821 6.45012 7.16919 7.31929 7.41759 7.79394 7.98808 8.14414 8.38604 8.60760 9.05729 9.61816 11.10455 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.057596 B = 0.007817 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.026248 B = 3581.163712 C = 3849.488880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.668 5.668 11 C 0.061 3.939 12 H 0.086 0.914 13 C 0.036 3.964 14 O -0.384 6.384 15 C 0.064 3.936 16 C -0.190 4.190 17 C 0.117 3.883 18 H 0.050 0.950 19 O -0.541 6.541 20 H 0.262 0.738 21 H 0.030 0.970 22 H -0.013 1.013 23 H 0.326 0.674 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -14.008 1.344 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.299 5.299 11 C -0.050 4.050 12 H 0.105 0.895 13 C -0.042 4.042 14 O -0.301 6.301 15 C -0.013 4.013 16 C -0.229 4.229 17 C 0.057 3.943 18 H 0.068 0.932 19 O -0.344 6.344 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.005 0.995 23 H 0.143 0.857 24 H 0.068 0.932 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.504 -13.367 0.868 13.845 hybrid contribution 0.692 0.407 0.665 1.043 sum 4.196 -12.960 1.533 13.708 Atomic orbital electron populations 1.69955 1.06070 1.26912 1.50770 1.24990 0.94885 0.99357 0.95330 0.86527 0.79403 0.82632 0.78625 1.20145 1.21333 1.20301 1.21139 0.93493 0.90222 1.50502 0.92004 1.19612 0.90519 0.87199 0.95830 1.60690 1.20578 1.00324 1.48281 1.22155 0.97296 0.91208 0.94386 0.89544 1.23547 0.98398 0.84857 0.97431 1.87926 1.41565 1.16679 1.83925 1.22489 0.95175 0.91047 0.92639 1.23028 1.02562 0.98668 0.98642 1.21809 0.96574 0.92149 0.83746 0.93239 1.86761 1.71924 1.52029 1.23721 0.92840 0.95223 0.99537 0.85707 0.93243 0.88001 0.93358 0.88979 0.90969 0.90232 0.79165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.24 5.24 -4.98 -0.03 5.21 16 10 N -0.67 -14.82 6.17 -107.84 -0.67 -15.49 16 11 C 0.06 1.15 2.34 -67.57 -0.16 0.99 16 12 H 0.09 1.83 7.80 -51.93 -0.41 1.42 16 13 C 0.04 0.60 6.10 37.20 0.23 0.83 16 14 O -0.38 -6.05 10.77 -35.23 -0.38 -6.43 16 15 C 0.06 0.76 6.84 37.21 0.25 1.01 16 16 C -0.19 -2.31 5.77 -26.59 -0.15 -2.46 16 17 C 0.12 1.79 3.20 -26.55 -0.08 1.71 16 18 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 19 O -0.54 -8.94 13.25 -35.23 -0.47 -9.41 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.03 0.88 8.06 -51.93 -0.42 0.46 16 22 H -0.01 -0.36 7.49 -51.93 -0.39 -0.75 16 23 H 0.33 6.75 8.44 -39.29 -0.33 6.42 16 24 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 25 H 0.10 1.82 7.53 -51.93 -0.39 1.43 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.36 3.99 9.09 45.56 0.41 4.41 16 LS Contribution 251.93 15.07 3.80 3.80 Total: -1.00 -32.61 251.93 -5.96 -38.56 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -3.60 Total: 4.90 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -0.36 Total: -6.42 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.07 Total: -42.03 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.85 Total: -15.83 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.61 -5.96 -38.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710906949.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.371 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds