Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.51803 * 35.00499 * 11 10 9 13 13 C 1.53091 * 109.52230 * 274.87679 * 11 10 9 14 14 O 1.42904 * 109.41071 * 182.48435 * 13 11 10 15 15 C 1.42903 * 114.09743 * 61.16138 * 14 13 11 16 16 C 1.53095 * 109.41433 * 298.83823 * 15 14 13 17 17 C 1.53175 * 109.52025 * 155.12727 * 11 10 9 18 18 H 1.09001 * 109.54596 * 57.02196 * 17 11 10 19 19 O 1.42899 * 109.54527 * 296.75506 * 17 11 10 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.00908 * 110.99847 * 56.05051 * 10 9 7 24 24 H 1.09001 * 109.48174 * 302.46393 * 13 11 10 25 25 H 1.09000 * 109.47893 * 62.49248 * 13 11 10 26 26 H 1.09001 * 109.48310 * 58.82072 * 15 14 13 27 27 H 1.08999 * 109.48371 * 178.84467 * 15 14 13 28 28 H 1.09001 * 109.52502 * 177.51829 * 16 15 14 29 29 H 1.09000 * 109.52275 * 297.63997 * 16 15 14 30 30 H 0.96701 * 114.00500 * 180.02562 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9071 0.0001 12 1 0.5919 -4.8263 -0.5889 13 6 1.1542 -5.2979 1.4380 14 8 0.5249 -6.5809 1.4412 15 6 1.3444 -7.6340 0.9297 16 6 1.7033 -7.3370 -0.5286 17 6 2.4126 -5.9816 -0.6071 18 1 3.3477 -6.0275 -0.0488 19 8 2.6847 -5.6615 -1.9730 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8406 -3.5487 0.7809 24 1 2.0643 -5.3380 2.0364 25 1 0.4739 -4.5581 1.8599 26 1 2.2570 -7.7046 1.5215 27 1 0.8011 -8.5773 0.9856 28 1 2.3643 -8.1166 -0.9072 29 1 0.7939 -7.3075 -1.1288 30 1 3.2548 -6.3014 -2.4210 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710906949.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -129.046013 kcal Electronic energy + Delta-G solvation = -13320.169911 eV Core-core repulsion = 10920.935514 eV Total energy + Delta-G solvation = -2399.234397 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.72780 -37.57721 -36.77602 -34.58558 -32.61803 -30.88127 -27.83706 -25.48722 -24.48940 -23.13660 -21.43362 -18.70411 -18.33503 -17.27876 -17.04397 -16.72017 -16.20747 -15.69624 -15.18361 -14.78044 -14.29763 -14.01723 -13.91501 -13.53405 -13.10102 -12.73134 -12.67245 -12.38712 -12.13742 -11.89207 -11.67137 -11.18635 -10.88405 -10.76165 -10.62428 -9.07514 -8.23417 -6.35667 1.40474 1.45016 1.53009 2.39244 2.78572 3.09495 3.25602 3.46504 3.77790 3.88495 4.02551 4.13005 4.17262 4.53990 4.57118 4.66310 4.74608 4.80755 4.99526 5.05505 5.21881 5.25005 5.58378 5.97003 6.11199 6.40918 6.67560 6.86058 7.06146 7.35269 8.88133 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.057596 B = 0.007817 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.026248 B = 3581.163712 C = 3849.488880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.212 3.788 10 N -0.669 5.669 11 C 0.056 3.944 12 H 0.049 0.951 13 C 0.048 3.952 14 O -0.401 6.401 15 C 0.055 3.945 16 C -0.180 4.180 17 C 0.120 3.880 18 H 0.068 0.932 19 O -0.573 6.573 20 H 0.266 0.734 21 H -0.011 1.011 22 H -0.034 1.034 23 H 0.336 0.664 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.012 -14.962 1.730 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.084 3.916 10 N -0.300 5.300 11 C -0.056 4.056 12 H 0.067 0.933 13 C -0.031 4.031 14 O -0.319 6.319 15 C -0.021 4.021 16 C -0.218 4.218 17 C 0.060 3.940 18 H 0.086 0.914 19 O -0.380 6.380 20 H 0.074 0.926 21 H 0.007 0.993 22 H -0.016 1.016 23 H 0.154 0.846 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.371 -14.369 1.252 15.391 hybrid contribution 0.095 0.594 0.508 0.787 sum 5.465 -13.776 1.760 14.924 Atomic orbital electron populations 1.70098 1.07923 1.28163 1.51315 1.26013 0.95823 1.03580 0.94433 0.85325 0.78058 0.77311 0.79228 1.19440 1.20706 1.18741 1.21513 0.93868 0.91331 1.50932 0.91578 1.19197 0.90551 0.88910 0.92907 1.60564 1.19965 1.00574 1.48935 1.22263 0.96658 0.90803 0.95830 0.93300 1.23230 0.98701 0.85293 0.95844 1.87908 1.42936 1.16747 1.84316 1.22854 0.96204 0.90620 0.92464 1.22949 1.02296 0.97664 0.98876 1.21776 0.96747 0.92107 0.83332 0.91385 1.86695 1.72937 1.53871 1.24475 0.92553 0.99277 1.01589 0.84586 0.90857 0.90525 0.91091 0.86297 0.86951 0.91863 0.76352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.98 45.18 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.76 9.32 25.60 0.24 -31.52 16 8 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 9 C 0.21 11.95 5.24 85.56 0.45 12.39 16 10 N -0.67 -30.31 6.17 -495.11 -3.05 -33.36 16 11 C 0.06 2.12 2.34 45.00 0.11 2.23 16 12 H 0.05 2.20 7.80 -2.39 -0.02 2.18 16 13 C 0.05 1.59 6.10 72.01 0.44 2.03 16 14 O -0.40 -12.18 10.77 -148.98 -1.60 -13.78 16 15 C 0.05 1.13 6.84 72.01 0.49 1.62 16 16 C -0.18 -3.84 5.77 30.69 0.18 -3.66 16 17 C 0.12 3.47 3.20 30.71 0.10 3.56 16 18 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 19 O -0.57 -18.24 13.25 -148.98 -1.97 -20.22 16 20 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 21 H -0.01 -0.69 8.06 -2.39 -0.02 -0.71 16 22 H -0.03 -1.98 7.49 -2.39 -0.02 -2.00 16 23 H 0.34 13.90 8.44 -89.69 -0.76 13.14 16 24 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 25 H 0.08 2.88 7.53 -2.39 -0.02 2.86 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.39 7.64 9.09 -74.06 -0.67 6.97 16 Total: -1.00 -72.18 251.93 -2.15 -74.33 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.29 Total: 16.60 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 2.46 Total: -12.90 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -2.77 Total: -91.24 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -3.58 Total: -34.00 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.18 -2.15 -74.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710906949.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.715 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds