Wall clock time and date at job start Mon Mar 30 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36929 * 119.99841 * 2 1 4 4 H 1.07998 * 120.00087 * 321.98198 * 3 2 1 5 5 C 1.38817 * 119.99748 * 141.98928 * 3 2 1 6 6 N 1.31623 * 119.99802 * 156.35854 * 5 3 2 7 7 Si 1.86793 * 119.99958 * 336.35785 * 5 3 2 8 8 H 1.48498 * 109.47089 * 95.34472 * 7 5 3 9 9 H 1.48496 * 109.47059 * 215.34049 * 7 5 3 10 10 H 1.48495 * 109.47147 * 335.34041 * 7 5 3 11 11 C 1.46497 * 119.99556 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47248 * 90.00310 * 11 2 1 13 13 H 1.08995 * 110.30876 * 59.29195 * 12 11 2 14 14 C 1.53713 * 110.34006 * 181.46930 * 12 11 2 15 15 C 1.52939 * 112.49137 * 116.04682 * 14 12 11 16 16 C 1.55149 * 108.96321 * 30.09677 * 15 14 12 17 17 S 1.83402 * 110.33892 * 297.12059 * 12 11 2 18 18 H 1.09001 * 109.46822 * 275.41563 * 1 2 3 19 19 H 1.08999 * 109.46998 * 35.41601 * 1 2 3 20 20 H 1.09000 * 109.47345 * 155.41655 * 1 2 3 21 21 H 0.97002 * 119.99808 * 179.97438 * 6 5 3 22 22 H 1.09006 * 109.47175 * 209.99986 * 11 2 1 23 23 H 1.08996 * 109.47614 * 329.99534 * 11 2 1 24 24 H 1.09007 * 108.88071 * 236.83638 * 14 12 11 25 25 H 1.08996 * 108.89021 * 355.38628 * 14 12 11 26 26 H 1.09003 * 109.60335 * 150.03222 * 15 14 12 27 27 H 1.09008 * 109.60277 * 270.16703 * 15 14 12 28 28 H 1.08995 * 111.13258 * 76.47018 * 16 15 14 29 29 H 1.09005 * 111.13296 * 200.60889 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7815 2.0219 -0.5760 5 6 3.3170 1.3133 0.7403 6 7 4.2101 2.2219 0.4096 7 14 3.6203 0.1955 2.2058 8 1 4.4447 -0.9644 1.7814 9 1 4.3367 0.9509 3.2647 10 1 2.3206 -0.2887 2.7364 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 3.0307 -0.9532 -1.9735 14 6 3.1886 -3.0590 -1.4673 15 6 2.3545 -4.1692 -2.1080 16 6 1.4186 -3.5443 -3.1761 17 16 0.8637 -2.0185 -2.3058 18 1 -0.3633 0.0970 1.0231 19 1 -0.3633 0.8375 -0.5955 20 1 -0.3634 -0.9345 -0.4275 21 1 5.0256 2.3112 0.9272 22 1 3.1499 -1.1387 0.5133 23 1 1.6084 -2.0286 0.5130 24 1 4.1157 -2.9450 -2.0293 25 1 3.4302 -3.3474 -0.4443 26 1 3.0148 -4.8963 -2.5808 27 1 1.7567 -4.6653 -1.3432 28 1 1.9681 -3.2988 -4.0848 29 1 0.5770 -4.2018 -3.3942 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715803517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:55 Heat of formation + Delta-G solvation = 16.448724 kcal Electronic energy + Delta-G solvation = -11545.918990 eV Core-core repulsion = 9595.746589 eV Total energy + Delta-G solvation = -1950.172401 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -36.75718 -34.99677 -31.67861 -30.01505 -26.46249 -25.61409 -23.34762 -20.93067 -20.01875 -16.89008 -16.25445 -15.28346 -15.00082 -14.17657 -13.75635 -13.22030 -12.97461 -12.90921 -12.40598 -11.63091 -11.53091 -11.47018 -11.14462 -11.05597 -10.71261 -10.42915 -10.27408 -9.88265 -9.62529 -9.16597 -8.51454 -7.23241 -6.72599 -6.00018 -3.39543 2.32438 2.91314 3.27277 3.45788 3.52391 4.51646 4.74740 4.93605 5.06647 5.22632 5.38780 5.47348 5.58297 5.70566 5.88927 5.94913 6.08278 6.18749 6.27938 6.46339 6.51674 6.67987 6.81665 6.87234 8.06463 8.40959 9.00459 9.72039 10.15222 11.15980 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.043687 B = 0.012811 C = 0.011527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.763068 B = 2185.022341 C = 2428.441183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.608 5.608 3 C -0.267 4.267 4 H 0.078 0.922 5 C 0.035 3.965 6 N -0.898 5.898 7 Si 0.872 3.128 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.269 1.269 11 C 0.155 3.845 12 C -0.046 4.046 13 H 0.100 0.900 14 C -0.129 4.129 15 C -0.119 4.119 16 C -0.088 4.088 17 S -0.280 6.280 18 H 0.007 0.993 19 H 0.037 0.963 20 H 0.047 0.953 21 H 0.263 0.737 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 -12.581 -3.854 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.331 5.331 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.540 5.540 7 Si 0.702 3.298 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.193 1.193 11 C 0.027 3.973 12 C -0.177 4.177 13 H 0.119 0.881 14 C -0.169 4.169 15 C -0.158 4.158 16 C -0.236 4.236 17 S -0.053 6.053 18 H 0.025 0.975 19 H 0.055 0.945 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.050 -11.856 -3.813 13.096 hybrid contribution 1.493 -1.081 0.793 2.007 sum -2.557 -12.938 -3.020 13.530 Atomic orbital electron populations 1.21193 0.84201 0.99537 0.97498 1.44022 1.01015 1.01662 1.86357 1.18819 1.05994 0.90888 1.23901 0.90408 1.25485 0.96791 0.96487 0.97756 1.69900 1.08188 1.36618 1.39246 0.86994 0.77999 0.79951 0.84892 1.21379 1.22712 1.19342 1.21258 0.96834 0.88372 0.90823 1.24670 0.92680 0.98082 1.02253 0.88145 1.22098 0.99345 0.93369 1.02097 1.22322 0.97805 0.98227 0.97486 1.24348 1.01564 0.97576 1.00104 1.87936 1.24008 1.34456 1.58930 0.97512 0.94468 0.93397 0.92738 0.91825 0.93358 0.91457 0.90716 0.91041 0.90902 0.89986 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.64 10.11 59.85 0.60 3.24 15 2 N -0.61 -15.06 2.35 -181.12 -0.43 -15.49 15 3 C -0.27 -7.67 9.92 -15.06 -0.15 -7.82 15 4 H 0.08 2.42 8.06 -52.49 -0.42 2.00 15 5 C 0.04 1.02 5.28 -17.43 -0.09 0.93 15 6 N -0.90 -27.52 13.97 55.49 0.78 -26.75 15 7 Si 0.87 22.17 25.17 -169.99 -4.28 17.90 15 8 H -0.29 -6.92 6.66 56.52 0.38 -6.54 15 9 H -0.30 -7.70 7.11 56.52 0.40 -7.30 15 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 15 11 C 0.16 3.41 3.82 -4.04 -0.02 3.40 15 12 C -0.05 -0.88 3.58 -26.36 -0.09 -0.98 15 13 H 0.10 2.20 8.14 -51.93 -0.42 1.77 15 14 C -0.13 -1.96 6.03 -26.39 -0.16 -2.12 15 15 C -0.12 -1.48 6.34 -25.63 -0.16 -1.64 15 16 C -0.09 -1.15 7.53 38.29 0.29 -0.86 15 17 S -0.28 -5.00 20.06 -107.50 -2.16 -7.16 15 18 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 15 19 H 0.04 0.81 8.08 -51.93 -0.42 0.39 15 20 H 0.05 0.95 6.08 -51.93 -0.32 0.64 15 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 22 H 0.06 1.51 3.43 -51.93 -0.18 1.33 15 23 H 0.05 0.98 8.07 -51.93 -0.42 0.56 15 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.07 1.10 7.62 -51.93 -0.40 0.71 15 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.07 0.87 8.14 -51.92 -0.42 0.45 15 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 15 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 241.68 15.07 3.64 3.64 Total: -1.00 -30.52 241.68 -6.49 -37.02 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.27 Total: -3.32 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 0.22 Total: -5.84 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.35 Total: -42.23 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.28 Total: 17.90 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -2.16 Total: -7.16 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.52 -6.49 -37.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715803517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.466 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds