Wall clock time and date at job start Mon Mar 30 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36929 * 119.99841 * 2 1 4 4 H 1.07998 * 120.00087 * 321.98198 * 3 2 1 5 5 C 1.38817 * 119.99748 * 141.98928 * 3 2 1 6 6 N 1.31623 * 119.99802 * 156.35854 * 5 3 2 7 7 Si 1.86793 * 119.99958 * 336.35785 * 5 3 2 8 8 H 1.48498 * 109.47089 * 95.34472 * 7 5 3 9 9 H 1.48496 * 109.47059 * 215.34049 * 7 5 3 10 10 H 1.48495 * 109.47147 * 335.34041 * 7 5 3 11 11 C 1.46497 * 119.99556 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47248 * 90.00310 * 11 2 1 13 13 H 1.08995 * 110.30876 * 59.29195 * 12 11 2 14 14 C 1.53713 * 110.34006 * 181.46930 * 12 11 2 15 15 C 1.52939 * 112.49137 * 116.04682 * 14 12 11 16 16 C 1.55149 * 108.96321 * 30.09677 * 15 14 12 17 17 S 1.83402 * 110.33892 * 297.12059 * 12 11 2 18 18 H 1.09001 * 109.46822 * 275.41563 * 1 2 3 19 19 H 1.08999 * 109.46998 * 35.41601 * 1 2 3 20 20 H 1.09000 * 109.47345 * 155.41655 * 1 2 3 21 21 H 0.97002 * 119.99808 * 179.97438 * 6 5 3 22 22 H 1.09006 * 109.47175 * 209.99986 * 11 2 1 23 23 H 1.08996 * 109.47614 * 329.99534 * 11 2 1 24 24 H 1.09007 * 108.88071 * 236.83638 * 14 12 11 25 25 H 1.08996 * 108.89021 * 355.38628 * 14 12 11 26 26 H 1.09003 * 109.60335 * 150.03222 * 15 14 12 27 27 H 1.09008 * 109.60277 * 270.16703 * 15 14 12 28 28 H 1.08995 * 111.13258 * 76.47018 * 16 15 14 29 29 H 1.09005 * 111.13296 * 200.60889 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7815 2.0219 -0.5760 5 6 3.3170 1.3133 0.7403 6 7 4.2101 2.2219 0.4096 7 14 3.6203 0.1955 2.2058 8 1 4.4447 -0.9644 1.7814 9 1 4.3367 0.9509 3.2647 10 1 2.3206 -0.2887 2.7364 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 3.0307 -0.9532 -1.9735 14 6 3.1886 -3.0590 -1.4673 15 6 2.3545 -4.1692 -2.1080 16 6 1.4186 -3.5443 -3.1761 17 16 0.8637 -2.0185 -2.3058 18 1 -0.3633 0.0970 1.0231 19 1 -0.3633 0.8375 -0.5955 20 1 -0.3634 -0.9345 -0.4275 21 1 5.0256 2.3112 0.9272 22 1 3.1499 -1.1387 0.5133 23 1 1.6084 -2.0286 0.5130 24 1 4.1157 -2.9450 -2.0293 25 1 3.4302 -3.3474 -0.4443 26 1 3.0148 -4.8963 -2.5808 27 1 1.7567 -4.6653 -1.3432 28 1 1.9681 -3.2988 -4.0848 29 1 0.5770 -4.2018 -3.3942 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715803517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:55 Heat of formation + Delta-G solvation = -2.766543 kcal Electronic energy + Delta-G solvation = -11546.752226 eV Core-core repulsion = 9595.746589 eV Total energy + Delta-G solvation = -1951.005637 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.40249 -36.45248 -33.82428 -31.48395 -28.22402 -27.25464 -24.81201 -22.85745 -21.25182 -18.92802 -17.67620 -17.20757 -16.35369 -15.72843 -15.33991 -14.95798 -14.71277 -14.54502 -13.86617 -13.41102 -13.17212 -12.92703 -12.65381 -12.54322 -12.30642 -12.18055 -11.81640 -11.64109 -11.38656 -10.67476 -10.56303 -8.91486 -8.49127 -8.24299 -5.62503 1.02422 1.25567 1.39623 1.51372 1.61658 2.38391 2.97534 3.36302 3.75068 3.86772 4.07284 4.20825 4.34016 4.46268 4.59898 4.67455 4.76399 4.78809 4.94756 5.00101 5.07113 5.10560 5.13104 5.26708 5.90141 6.12313 6.93838 7.57667 8.02017 8.95901 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.043687 B = 0.012811 C = 0.011527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.763068 B = 2185.022341 C = 2428.441183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.620 5.620 3 C -0.267 4.267 4 H 0.033 0.967 5 C -0.017 4.017 6 N -0.945 5.945 7 Si 0.942 3.058 8 H -0.263 1.263 9 H -0.303 1.303 10 H -0.262 1.262 11 C 0.152 3.848 12 C -0.042 4.042 13 H 0.060 0.940 14 C -0.128 4.128 15 C -0.112 4.112 16 C -0.068 4.068 17 S -0.332 6.332 18 H 0.014 0.986 19 H 0.026 0.974 20 H 0.069 0.931 21 H 0.265 0.735 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -15.904 -3.652 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.344 5.344 3 C -0.397 4.397 4 H 0.051 0.949 5 C -0.214 4.214 6 N -0.589 5.589 7 Si 0.769 3.231 8 H -0.190 1.190 9 H -0.231 1.231 10 H -0.187 1.187 11 C 0.026 3.974 12 C -0.173 4.173 13 H 0.079 0.921 14 C -0.168 4.168 15 C -0.151 4.151 16 C -0.215 4.215 17 S -0.106 6.106 18 H 0.032 0.968 19 H 0.045 0.955 20 H 0.088 0.912 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.226 -15.216 -3.622 16.202 hybrid contribution 1.483 -0.041 0.590 1.597 sum -2.743 -15.256 -3.032 15.795 Atomic orbital electron populations 1.21211 0.82639 1.00329 0.97829 1.44119 1.02128 1.01398 1.86717 1.18639 1.06314 0.91568 1.23144 0.94904 1.26091 0.96474 0.98661 1.00132 1.70024 1.08987 1.39296 1.40564 0.85873 0.78284 0.78535 0.80403 1.18969 1.23122 1.18681 1.21326 0.95974 0.87451 0.92689 1.24350 0.93397 0.99637 0.99963 0.92125 1.22132 0.99649 0.91790 1.03208 1.22307 0.97852 0.97464 0.97436 1.24514 1.02595 0.94432 1.00002 1.88000 1.23811 1.38548 1.60221 0.96816 0.95532 0.91223 0.92604 0.93480 0.91149 0.90677 0.90004 0.87654 0.89935 0.89068 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.39 10.11 127.77 1.29 6.69 15 2 N -0.62 -30.83 2.35 -726.93 -1.71 -32.54 15 3 C -0.27 -15.83 9.92 84.04 0.83 -15.00 15 4 H 0.03 2.20 8.06 -2.91 -0.02 2.17 15 5 C -0.02 -0.99 5.28 84.86 0.45 -0.54 15 6 N -0.95 -59.70 13.97 21.65 0.30 -59.40 15 7 Si 0.94 45.98 25.17 68.60 1.73 47.71 15 8 H -0.26 -11.80 6.66 99.48 0.66 -11.14 15 9 H -0.30 -14.88 7.11 99.48 0.71 -14.18 15 10 H -0.26 -12.45 7.11 99.48 0.71 -11.75 15 11 C 0.15 6.51 3.82 86.38 0.33 6.84 15 12 C -0.04 -1.59 3.58 30.83 0.11 -1.48 15 13 H 0.06 2.72 8.14 -2.39 -0.02 2.70 15 14 C -0.13 -3.48 6.03 30.81 0.19 -3.30 15 15 C -0.11 -2.23 6.34 31.31 0.20 -2.03 15 16 C -0.07 -1.50 7.53 72.72 0.55 -0.96 15 17 S -0.33 -11.34 20.06 -56.49 -1.13 -12.47 15 18 H 0.01 0.57 8.14 -2.39 -0.02 0.55 15 19 H 0.03 1.17 8.08 -2.39 -0.02 1.15 15 20 H 0.07 2.69 6.08 -2.39 -0.01 2.68 15 21 H 0.26 15.70 8.31 -92.71 -0.77 14.93 15 22 H 0.05 2.16 3.43 -2.38 -0.01 2.15 15 23 H 0.07 2.68 8.07 -2.39 -0.02 2.66 15 24 H 0.07 1.92 8.14 -2.38 -0.02 1.90 15 25 H 0.08 2.12 7.62 -2.39 -0.02 2.11 15 26 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 27 H 0.08 1.54 8.14 -2.38 -0.02 1.52 15 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 29 H 0.12 2.14 8.14 -2.38 -0.02 2.12 15 Total: -1.00 -67.74 241.68 4.20 -63.54 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 1.07 Total: 2.95 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 3.94 Total: -9.78 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -1.41 Total: -91.94 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.73 Total: 47.71 kcal Atomic # 16 Polarization: -11.34 SS G_CDS: -1.13 Total: -12.47 kcal Total: -67.74 4.20 -63.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715803517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.775 kcal (2) G-P(sol) polarization free energy of solvation -67.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds