Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47236 * 300.00557 * 3 2 1 6 6 H 1.48500 * 109.46924 * 60.00320 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.53003 * 112.99920 * 48.16906 * 12 11 10 14 14 O 1.42904 * 109.47115 * 180.02562 * 13 12 11 15 15 C 1.54040 * 113.81883 * 276.18758 * 12 11 10 16 16 O 1.44176 * 85.51928 * 223.19165 * 15 12 11 17 17 C 1.44183 * 93.34022 * 24.19177 * 16 15 12 18 18 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 20 20 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 21 21 H 1.00908 * 110.99583 * 303.94914 * 10 9 7 22 22 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 23 23 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 24 24 H 1.08993 * 109.47734 * 300.00238 * 13 12 11 25 25 H 1.09006 * 109.46647 * 60.00231 * 13 12 11 26 26 H 0.96702 * 113.99816 * 180.02562 * 14 13 12 27 27 H 1.08999 * 113.85864 * 337.34288 * 15 12 11 28 28 H 1.09000 * 113.86353 * 109.04720 * 15 12 11 29 29 H 1.08991 * 113.86578 * 221.65835 * 17 16 15 30 30 H 1.09000 * 113.86692 * 89.95141 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 3.6281 -5.8582 1.0477 14 8 4.5403 -6.9562 0.9812 15 6 3.0596 -6.4024 -1.4030 16 8 2.9030 -7.7738 -0.9865 17 6 1.9006 -7.4489 -0.0024 18 1 -0.4850 0.8400 0.0004 19 1 0.6240 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 2.8404 -3.5486 -0.7820 22 1 0.8801 -4.9817 0.8886 23 1 0.8807 -4.9812 -0.8913 24 1 4.1638 -4.9291 0.8535 25 1 3.1790 -5.8181 2.0401 26 1 5.2642 -6.9054 1.6204 27 1 2.3936 -6.1092 -2.2145 28 1 4.0955 -6.1084 -1.5718 29 1 2.0173 -7.9847 0.9395 30 1 0.8808 -7.4751 -0.3863 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717603894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -64.459808 kcal Electronic energy + Delta-G solvation = -13148.859197 eV Core-core repulsion = 10752.425468 eV Total energy + Delta-G solvation = -2396.433729 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.50541 -36.16596 -35.34576 -32.69232 -30.57695 -26.78158 -26.36323 -25.34188 -23.57861 -21.41131 -18.68901 -17.30495 -16.43131 -15.98707 -15.78046 -15.10730 -14.56584 -14.38782 -14.32855 -13.21897 -12.75864 -12.63767 -12.20322 -11.82712 -11.56694 -11.08929 -10.95666 -10.72637 -10.59176 -10.25897 -9.83922 -9.64853 -9.36885 -9.17062 -8.53829 -7.41416 -6.08527 -4.10873 3.27537 3.34998 3.39660 3.89629 4.28279 4.40088 4.42234 4.91218 5.23579 5.27779 5.44462 5.53523 5.62454 5.73016 5.78500 5.96164 6.06686 6.16072 6.28375 6.30440 6.39905 7.16133 7.34105 7.71536 7.82333 8.05462 8.28544 8.51496 8.98361 9.54471 11.02613 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.061419 B = 0.006978 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.772959 B = 4011.442511 C = 4214.744838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.688 5.688 11 C 0.067 3.933 12 C -0.121 4.121 13 C 0.107 3.893 14 O -0.569 6.569 15 C 0.047 3.953 16 O -0.370 6.370 17 C 0.048 3.952 18 H 0.261 0.739 19 H -0.013 1.013 20 H 0.028 0.972 21 H 0.328 0.672 22 H 0.070 0.930 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.373 0.627 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 -10.811 0.780 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.318 5.318 11 C -0.063 4.063 12 C -0.122 4.122 13 C 0.030 3.970 14 O -0.374 6.374 15 C -0.030 4.030 16 O -0.288 6.288 17 C -0.030 4.030 18 H 0.071 0.929 19 H 0.005 0.995 20 H 0.046 0.954 21 H 0.145 0.855 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.219 0.781 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.563 -11.098 0.908 12.034 hybrid contribution 0.171 1.366 -0.375 1.427 sum 4.734 -9.732 0.533 10.836 Atomic orbital electron populations 1.69968 1.06108 1.26768 1.50850 1.25000 0.94884 0.99439 0.95281 0.86421 0.80036 0.83283 0.77548 1.19651 1.21061 1.20965 1.21208 0.93538 0.90194 1.50419 0.91892 1.19576 0.90594 0.87345 0.95874 1.60731 1.21211 1.01104 1.48743 1.21902 0.94283 0.89650 1.00500 1.23719 0.96367 0.95845 0.96264 1.21665 0.89696 0.89044 0.96600 1.86564 1.41354 1.47109 1.62347 1.23950 1.01831 0.81965 0.95247 1.89659 1.57138 1.26231 1.55769 1.23895 0.92383 0.93432 0.93274 0.92907 0.99502 0.95360 0.85531 0.91136 0.95317 0.91309 0.93249 0.78149 0.90719 0.89294 0.89467 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.32 9.32 -34.44 -0.32 -14.65 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 4.92 5.44 -4.98 -0.03 4.90 16 10 N -0.69 -14.00 5.56 -115.06 -0.64 -14.64 16 11 C 0.07 1.14 5.20 -3.83 -0.02 1.12 16 12 C -0.12 -1.79 1.16 -153.42 -0.18 -1.97 16 13 C 0.11 1.52 6.30 37.16 0.23 1.76 16 14 O -0.57 -7.65 12.10 -52.76 -0.64 -8.29 16 15 C 0.05 0.69 8.07 37.61 0.30 1.00 16 16 O -0.37 -6.02 11.59 -52.76 -0.61 -6.63 16 17 C 0.05 0.66 8.08 37.61 0.30 0.97 16 18 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 19 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 20 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.33 6.44 8.72 -39.29 -0.34 6.09 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 23 H 0.03 0.49 7.93 -51.93 -0.41 0.08 16 24 H 0.07 1.03 7.60 -51.93 -0.39 0.64 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.37 3.30 9.12 45.56 0.42 3.71 16 27 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 28 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 256.72 15.07 3.87 3.87 Total: -1.00 -31.24 256.72 -5.75 -36.99 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.64 Total: 3.56 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 0.20 Total: -5.42 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.10 Total: -40.46 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.25 Total: -14.93 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.24 -5.75 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717603894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.474 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds