Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47236 * 300.00557 * 3 2 1 6 6 H 1.48500 * 109.46924 * 60.00320 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.53003 * 112.99920 * 48.16906 * 12 11 10 14 14 O 1.42904 * 109.47115 * 180.02562 * 13 12 11 15 15 C 1.54040 * 113.81883 * 276.18758 * 12 11 10 16 16 O 1.44176 * 85.51928 * 223.19165 * 15 12 11 17 17 C 1.44183 * 93.34022 * 24.19177 * 16 15 12 18 18 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 20 20 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 21 21 H 1.00908 * 110.99583 * 303.94914 * 10 9 7 22 22 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 23 23 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 24 24 H 1.08993 * 109.47734 * 300.00238 * 13 12 11 25 25 H 1.09006 * 109.46647 * 60.00231 * 13 12 11 26 26 H 0.96702 * 113.99816 * 180.02562 * 14 13 12 27 27 H 1.08999 * 113.85864 * 337.34288 * 15 12 11 28 28 H 1.09000 * 113.86353 * 109.04720 * 15 12 11 29 29 H 1.08991 * 113.86578 * 221.65835 * 17 16 15 30 30 H 1.09000 * 113.86692 * 89.95141 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 3.6281 -5.8582 1.0477 14 8 4.5403 -6.9562 0.9812 15 6 3.0596 -6.4024 -1.4030 16 8 2.9030 -7.7738 -0.9865 17 6 1.9006 -7.4489 -0.0024 18 1 -0.4850 0.8400 0.0004 19 1 0.6240 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 2.8404 -3.5486 -0.7820 22 1 0.8801 -4.9817 0.8886 23 1 0.8807 -4.9812 -0.8913 24 1 4.1638 -4.9291 0.8535 25 1 3.1790 -5.8181 2.0401 26 1 5.2642 -6.9054 1.6204 27 1 2.3936 -6.1092 -2.2145 28 1 4.0955 -6.1084 -1.5718 29 1 2.0173 -7.9847 0.9395 30 1 0.8808 -7.4751 -0.3863 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717603894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -89.387400 kcal Electronic energy + Delta-G solvation = -13149.940138 eV Core-core repulsion = 10752.425468 eV Total energy + Delta-G solvation = -2397.514670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.68814 -37.32343 -36.95364 -34.67627 -32.09229 -28.63903 -27.50138 -26.52189 -25.22099 -23.29970 -19.88389 -18.75752 -18.10301 -17.22065 -17.05511 -16.64936 -16.33185 -15.81092 -15.45551 -14.92461 -14.48435 -14.03343 -13.51164 -13.31862 -13.28134 -12.81208 -12.68315 -12.26052 -12.12240 -11.85406 -11.44513 -11.11573 -10.74006 -10.66924 -10.49323 -9.15722 -8.23079 -6.33884 1.41834 1.42471 1.56020 2.39843 2.75099 3.09977 3.11191 3.36038 3.59033 3.93957 4.24661 4.36564 4.42876 4.58120 4.62455 4.68651 4.86148 4.91744 5.06551 5.07520 5.15945 5.26449 5.27639 5.60982 6.00930 6.40342 6.68580 6.87809 6.98880 7.37294 8.88683 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.061419 B = 0.006978 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.772959 B = 4011.442511 C = 4214.744838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.207 3.793 10 N -0.681 5.681 11 C 0.071 3.929 12 C -0.119 4.119 13 C 0.113 3.887 14 O -0.579 6.579 15 C 0.047 3.953 16 O -0.390 6.390 17 C 0.052 3.948 18 H 0.265 0.735 19 H -0.038 1.038 20 H 0.002 0.998 21 H 0.335 0.665 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.393 0.607 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 -10.877 0.864 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.311 5.311 11 C -0.059 4.059 12 C -0.120 4.120 13 C 0.035 3.965 14 O -0.387 6.387 15 C -0.029 4.029 16 O -0.308 6.308 17 C -0.025 4.025 18 H 0.074 0.926 19 H -0.020 1.020 20 H 0.020 0.980 21 H 0.152 0.848 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.242 0.758 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.596 -11.190 1.000 12.551 hybrid contribution -0.143 1.309 -0.389 1.373 sum 5.453 -9.881 0.612 11.302 Atomic orbital electron populations 1.70090 1.07804 1.27938 1.51657 1.25942 0.95758 1.03380 0.94662 0.85293 0.78993 0.78393 0.77672 1.18573 1.20455 1.20482 1.21580 0.93879 0.91369 1.50365 0.91586 1.19227 0.90656 0.88829 0.93402 1.60579 1.20303 1.01177 1.49082 1.21915 0.94867 0.88638 1.00464 1.23678 0.96196 0.95283 0.96852 1.21524 0.89621 0.88855 0.96478 1.86516 1.42082 1.46622 1.63446 1.24026 1.02227 0.81374 0.95312 1.89641 1.57920 1.26909 1.56377 1.24030 0.92711 0.92316 0.93430 0.92639 1.01993 0.97971 0.84826 0.91349 0.95145 0.92356 0.92867 0.75834 0.89909 0.89063 0.88452 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -29.69 9.32 25.60 0.24 -29.45 16 8 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 10.72 5.44 85.55 0.47 11.18 16 10 N -0.68 -27.51 5.56 -517.93 -2.88 -30.39 16 11 C 0.07 2.35 5.20 86.30 0.45 2.80 16 12 C -0.12 -3.35 1.16 -51.48 -0.06 -3.41 16 13 C 0.11 3.02 6.30 71.98 0.45 3.48 16 14 O -0.58 -14.40 12.10 -132.22 -1.60 -16.00 16 15 C 0.05 1.32 8.07 72.28 0.58 1.90 16 16 O -0.39 -11.97 11.59 -132.22 -1.53 -13.50 16 17 C 0.05 1.35 8.08 72.28 0.58 1.93 16 18 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 19 H -0.04 -2.10 8.14 -2.39 -0.02 -2.12 16 20 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 21 H 0.33 12.90 8.72 -89.69 -0.78 12.11 16 22 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.03 1.01 7.93 -2.39 -0.02 0.99 16 24 H 0.06 1.68 7.60 -2.39 -0.02 1.66 16 25 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.39 6.09 9.12 -74.06 -0.68 5.42 16 27 H 0.08 2.15 7.96 -2.39 -0.02 2.13 16 28 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 29 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 30 H 0.09 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -65.22 256.72 -0.85 -66.07 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.32 Total: 14.78 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 3.18 Total: -11.06 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.59 Total: -85.83 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -3.13 Total: -29.50 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -65.22 -0.85 -66.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717603894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.321 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds