Wall clock time and date at job start Mon Mar 30 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99931 * 2 1 4 4 H 1.09000 * 109.47852 * 310.01611 * 3 2 1 5 5 C 1.53100 * 109.47757 * 189.99871 * 3 2 1 6 6 C 1.53184 * 109.16187 * 297.62452 * 5 3 2 7 7 H 1.09000 * 109.61814 * 62.93140 * 6 5 3 8 8 C 1.50701 * 109.54080 * 183.15464 * 6 5 3 9 9 H 1.07998 * 119.99589 * 84.42409 * 8 6 5 10 10 C 1.37872 * 119.99801 * 264.42027 * 8 6 5 11 11 N 1.31510 * 120.00309 * 5.22963 * 10 8 6 12 12 Si 1.86805 * 119.99834 * 185.22617 * 10 8 6 13 13 H 1.48493 * 109.46889 * 90.00411 * 12 10 8 14 14 H 1.48501 * 109.47053 * 210.00392 * 12 10 8 15 15 H 1.48500 * 109.47153 * 330.00221 * 12 10 8 16 16 C 1.53183 * 109.03447 * 303.01971 * 6 5 3 17 17 H 1.08993 * 109.52161 * 297.01429 * 16 6 5 18 18 O 1.42902 * 109.52005 * 176.88608 * 16 6 5 19 19 C 1.53096 * 109.16110 * 56.98337 * 16 6 5 20 20 O 1.42896 * 109.48168 * 70.05671 * 3 2 1 21 21 H 1.08997 * 109.47066 * 59.99985 * 1 2 3 22 22 H 1.09001 * 109.47525 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47338 * 300.00495 * 1 2 3 24 24 H 1.09000 * 109.52051 * 177.71696 * 5 3 2 25 25 H 1.08996 * 109.57421 * 57.56207 * 5 3 2 26 26 H 0.97002 * 120.00767 * 179.97438 * 11 10 8 27 27 H 0.96694 * 113.99876 * 179.97438 * 18 16 6 28 28 H 1.08997 * 109.47839 * 62.37478 * 19 16 6 29 29 H 1.09002 * 109.47611 * 182.40434 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.5544 1.9063 -0.7870 5 6 3.5164 1.1937 -0.2506 6 6 4.1584 0.3990 0.8908 7 1 3.7584 -0.6149 0.9010 8 6 5.6516 0.3499 0.6932 9 1 6.2693 1.1648 1.0405 10 6 6.2290 -0.7354 0.0690 11 7 5.4704 -1.6786 -0.4452 12 14 8.0889 -0.8662 -0.0463 13 1 8.6090 -1.5877 1.1428 14 1 8.4574 -1.6104 -1.2774 15 1 8.6787 0.4958 -0.0960 16 6 3.8400 1.0890 2.2208 17 1 4.2849 2.0840 2.2307 18 8 4.3726 0.3169 3.2989 19 6 2.3213 1.2048 2.3759 20 8 1.7842 1.9278 1.2664 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 3.9539 2.1912 -0.2911 25 1 3.6922 0.6803 -1.1958 26 1 5.8765 -2.4421 -0.8847 27 1 4.2079 0.6960 4.1730 28 1 1.8821 0.2077 2.4070 29 1 2.0896 1.7333 3.3006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307576226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:53 Heat of formation + Delta-G solvation = -150.760969 kcal Electronic energy + Delta-G solvation = -14022.368867 eV Core-core repulsion = 11524.474177 eV Total energy + Delta-G solvation = -2497.894690 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 202.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26719 -36.49866 -35.05942 -33.42307 -31.00250 -28.93979 -26.47746 -25.39801 -22.62916 -22.12906 -19.11625 -16.89065 -16.64362 -16.41760 -15.63482 -14.89789 -14.60019 -14.19200 -13.50219 -13.16277 -12.68527 -12.48570 -12.03483 -11.55865 -11.22224 -10.91306 -10.76264 -10.61239 -10.20810 -10.11038 -10.05181 -9.58570 -9.23063 -8.78923 -8.42621 -8.28760 -5.91655 -3.94470 3.37731 3.43663 3.46274 4.15536 4.39023 4.51683 5.26249 5.37431 5.54167 5.65704 5.70325 5.77100 5.80833 5.92634 6.03067 6.06837 6.51009 6.56828 6.79831 7.06988 7.25863 7.47227 7.87613 7.92674 8.04324 8.42609 8.61950 9.13516 9.68003 11.17370 Molecular weight = 202.10amu Principal moments of inertia in cm(-1) A = 0.041497 B = 0.012105 C = 0.010496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.593335 B = 2312.464608 C = 2667.016203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.236 3.764 4 H 0.086 0.914 5 C -0.119 4.119 6 C 0.047 3.953 7 H 0.073 0.927 8 C -0.503 4.503 9 H 0.052 0.948 10 C 0.065 3.935 11 N -0.887 5.887 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.080 3.920 17 H 0.042 0.958 18 O -0.542 6.542 19 C 0.033 3.967 20 O -0.401 6.401 21 H 0.035 0.965 22 H 0.079 0.921 23 H 0.039 0.961 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.260 0.740 27 H 0.351 0.649 28 H 0.058 0.942 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 5.081 2.439 9.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.141 3.859 4 H 0.103 0.897 5 C -0.157 4.157 6 C 0.029 3.971 7 H 0.091 0.909 8 C -0.541 4.541 9 H 0.070 0.930 10 C -0.137 4.137 11 N -0.525 5.525 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.200 1.200 16 C 0.021 3.979 17 H 0.060 0.940 18 O -0.343 6.343 19 C -0.043 4.043 20 O -0.322 6.322 21 H 0.053 0.947 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.194 0.806 28 H 0.076 0.924 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.387 4.518 1.833 8.851 hybrid contribution 0.672 0.274 0.345 0.804 sum -6.714 4.792 2.178 8.531 Atomic orbital electron populations 1.22659 0.82461 1.01984 0.99492 1.88209 1.18664 1.29465 1.93800 1.23828 0.96101 0.81365 0.84613 0.89674 1.22301 0.88769 1.01324 1.03338 1.18791 0.96325 0.96745 0.85286 0.90886 1.20914 0.91263 1.04444 1.37459 0.93015 1.24968 0.97844 0.95695 0.95206 1.69972 1.34650 1.10611 1.37298 0.86623 0.86129 0.78025 0.77318 1.20658 1.21419 1.20022 1.22749 0.89732 0.94562 0.90876 0.94004 1.86809 1.80228 1.51792 1.15515 1.23283 0.96002 0.96834 0.88216 1.87916 1.78627 1.49603 1.16094 0.94681 0.90222 0.94205 0.91616 0.90115 0.93060 0.80592 0.92352 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.88 101.05 1.10 1.57 15 2 O -0.38 -7.82 9.17 -59.04 -0.54 -8.36 15 3 C 0.24 4.65 3.59 37.21 0.13 4.78 15 4 H 0.09 1.45 8.09 -51.93 -0.42 1.03 15 5 C -0.12 -2.72 5.13 -26.58 -0.14 -2.85 15 6 C 0.05 1.22 1.84 -91.58 -0.17 1.05 15 7 H 0.07 2.18 7.06 -51.93 -0.37 1.81 15 8 C -0.50 -14.34 8.05 -34.44 -0.28 -14.61 15 9 H 0.05 1.47 7.82 -52.49 -0.41 1.06 15 10 C 0.06 1.87 5.45 -17.82 -0.10 1.78 15 11 N -0.89 -26.70 12.84 55.43 0.71 -25.99 15 12 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 15 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 C 0.08 1.77 3.06 -26.59 -0.08 1.69 15 17 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 18 O -0.54 -11.85 13.04 -35.23 -0.46 -12.31 15 19 C 0.03 0.64 6.30 37.21 0.23 0.87 15 20 O -0.40 -7.79 10.30 -59.04 -0.61 -8.40 15 21 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.04 0.58 7.89 -51.93 -0.41 0.17 15 24 H 0.07 1.42 8.14 -51.93 -0.42 0.99 15 25 H 0.08 1.97 8.14 -51.93 -0.42 1.55 15 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 27 H 0.35 5.45 9.09 45.56 0.41 5.86 15 28 H 0.06 1.17 7.56 -51.93 -0.39 0.78 15 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 245.19 15.07 3.69 3.69 Total: -1.00 -32.43 245.19 -4.77 -37.20 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.26 Total: 2.81 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 0.71 Total: -5.72 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.71 Total: -25.99 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.61 Total: -29.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.43 -4.77 -37.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307576226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.561 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds