Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99931 * 2 1 4 4 H 1.09000 * 109.47852 * 310.01611 * 3 2 1 5 5 C 1.53100 * 109.47757 * 189.99871 * 3 2 1 6 6 C 1.53184 * 109.16187 * 297.62452 * 5 3 2 7 7 H 1.09000 * 109.61814 * 62.93140 * 6 5 3 8 8 C 1.50701 * 109.54080 * 183.15464 * 6 5 3 9 9 H 1.07998 * 119.99589 * 84.42409 * 8 6 5 10 10 C 1.37872 * 119.99801 * 264.42027 * 8 6 5 11 11 N 1.31510 * 120.00309 * 5.22963 * 10 8 6 12 12 Si 1.86805 * 119.99834 * 185.22617 * 10 8 6 13 13 H 1.48493 * 109.46889 * 90.00411 * 12 10 8 14 14 H 1.48501 * 109.47053 * 210.00392 * 12 10 8 15 15 H 1.48500 * 109.47153 * 330.00221 * 12 10 8 16 16 C 1.53183 * 109.03447 * 303.01971 * 6 5 3 17 17 H 1.08993 * 109.52161 * 297.01429 * 16 6 5 18 18 O 1.42902 * 109.52005 * 176.88608 * 16 6 5 19 19 C 1.53096 * 109.16110 * 56.98337 * 16 6 5 20 20 O 1.42896 * 109.48168 * 70.05671 * 3 2 1 21 21 H 1.08997 * 109.47066 * 59.99985 * 1 2 3 22 22 H 1.09001 * 109.47525 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47338 * 300.00495 * 1 2 3 24 24 H 1.09000 * 109.52051 * 177.71696 * 5 3 2 25 25 H 1.08996 * 109.57421 * 57.56207 * 5 3 2 26 26 H 0.97002 * 120.00767 * 179.97438 * 11 10 8 27 27 H 0.96694 * 113.99876 * 179.97438 * 18 16 6 28 28 H 1.08997 * 109.47839 * 62.37478 * 19 16 6 29 29 H 1.09002 * 109.47611 * 182.40434 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.5544 1.9063 -0.7870 5 6 3.5164 1.1937 -0.2506 6 6 4.1584 0.3990 0.8908 7 1 3.7584 -0.6149 0.9010 8 6 5.6516 0.3499 0.6932 9 1 6.2693 1.1648 1.0405 10 6 6.2290 -0.7354 0.0690 11 7 5.4704 -1.6786 -0.4452 12 14 8.0889 -0.8662 -0.0463 13 1 8.6090 -1.5877 1.1428 14 1 8.4574 -1.6104 -1.2774 15 1 8.6787 0.4958 -0.0960 16 6 3.8400 1.0890 2.2208 17 1 4.2849 2.0840 2.2307 18 8 4.3726 0.3169 3.2989 19 6 2.3213 1.2048 2.3759 20 8 1.7842 1.9278 1.2664 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 3.9539 2.1912 -0.2911 25 1 3.6922 0.6803 -1.1958 26 1 5.8765 -2.4421 -0.8847 27 1 4.2079 0.6960 4.1730 28 1 1.8821 0.2077 2.4070 29 1 2.0896 1.7333 3.3006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307576226.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = -176.394852 kcal Electronic energy + Delta-G solvation = -14023.480436 eV Core-core repulsion = 11524.474177 eV Total energy + Delta-G solvation = -2499.006259 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 202.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.85774 -38.10655 -36.62036 -35.43085 -32.98546 -30.54480 -28.12528 -27.04855 -24.43726 -23.83212 -20.88098 -18.78128 -18.31925 -18.02113 -17.38404 -16.55829 -16.38935 -15.88576 -15.02943 -14.65480 -14.41388 -14.18936 -13.79620 -13.12874 -13.01854 -12.79293 -12.62828 -12.55129 -12.02118 -11.90495 -11.58218 -11.18037 -11.00430 -10.71022 -10.48785 -10.12407 -8.09709 -6.19197 1.39609 1.42152 1.51275 2.44036 2.69549 2.94969 3.18462 3.73377 4.04330 4.15060 4.21012 4.29048 4.47672 4.56123 4.58132 4.73865 4.82768 4.88293 5.00817 5.25603 5.57377 5.70897 5.76415 5.91132 6.31229 6.47162 6.93098 7.20011 7.46316 8.99084 Molecular weight = 202.10amu Principal moments of inertia in cm(-1) A = 0.041497 B = 0.012105 C = 0.010496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.593335 B = 2312.464608 C = 2667.016203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.241 3.759 4 H 0.120 0.880 5 C -0.116 4.116 6 C 0.041 3.959 7 H 0.025 0.975 8 C -0.518 4.518 9 H 0.048 0.952 10 C 0.009 3.991 11 N -0.924 5.924 12 Si 0.956 3.044 13 H -0.279 1.279 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.083 3.917 17 H 0.048 0.952 18 O -0.568 6.568 19 C 0.042 3.958 20 O -0.395 6.395 21 H 0.058 0.942 22 H 0.091 0.909 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.259 0.741 27 H 0.379 0.621 28 H 0.044 0.956 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 6.361 3.024 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.146 3.854 4 H 0.137 0.863 5 C -0.154 4.154 6 C 0.022 3.978 7 H 0.043 0.957 8 C -0.556 4.556 9 H 0.066 0.934 10 C -0.189 4.189 11 N -0.563 5.563 12 Si 0.781 3.219 13 H -0.205 1.205 14 H -0.208 1.208 15 H -0.189 1.189 16 C 0.024 3.976 17 H 0.066 0.934 18 O -0.374 6.374 19 C -0.035 4.035 20 O -0.316 6.316 21 H 0.076 0.924 22 H 0.109 0.891 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.227 0.773 28 H 0.062 0.938 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.884 5.822 2.442 10.100 hybrid contribution 0.781 -0.132 0.211 0.819 sum -7.103 5.690 2.653 9.480 Atomic orbital electron populations 1.22899 0.79753 1.03374 1.01012 1.88166 1.21692 1.29974 1.94025 1.23729 0.94048 0.81915 0.85691 0.86310 1.22106 0.91747 1.00764 1.00769 1.18718 0.94977 0.95253 0.88844 0.95704 1.21299 0.93017 1.04354 1.36914 0.93357 1.25788 1.02514 0.95524 0.95106 1.70117 1.36497 1.11249 1.38453 0.85599 0.80557 0.78407 0.77308 1.20538 1.20816 1.18863 1.22561 0.92051 0.93840 0.89145 0.93400 1.86730 1.80673 1.52692 1.17272 1.23238 0.93383 0.97029 0.89802 1.87933 1.78257 1.49432 1.15939 0.92374 0.89059 0.93338 0.90577 0.92888 0.93181 0.77329 0.93768 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.88 113.37 1.23 1.96 15 2 O -0.42 -16.86 9.17 -126.21 -1.16 -18.02 15 3 C 0.24 9.14 3.59 72.02 0.26 9.40 15 4 H 0.12 3.71 8.09 -2.39 -0.02 3.69 15 5 C -0.12 -5.29 5.13 30.69 0.16 -5.14 15 6 C 0.04 2.15 1.84 -11.42 -0.02 2.13 15 7 H 0.02 1.53 7.06 -2.39 -0.02 1.52 15 8 C -0.52 -29.95 8.05 25.60 0.21 -29.74 15 9 H 0.05 2.75 7.82 -2.91 -0.02 2.73 15 10 C 0.01 0.52 5.45 84.65 0.46 0.98 15 11 N -0.92 -57.24 12.84 21.44 0.28 -56.96 15 12 Si 0.96 45.84 29.54 68.60 2.03 47.86 15 13 H -0.28 -13.25 7.11 99.48 0.71 -12.55 15 14 H -0.28 -13.17 7.11 99.48 0.71 -12.47 15 15 H -0.26 -12.08 7.11 99.48 0.71 -11.37 15 16 C 0.08 3.59 3.06 30.69 0.09 3.68 15 17 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 18 O -0.57 -24.30 13.04 -148.98 -1.94 -26.24 15 19 C 0.04 1.51 6.30 72.01 0.45 1.96 15 20 O -0.39 -14.26 10.30 -126.21 -1.30 -15.56 15 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.05 1.28 7.89 -2.39 -0.02 1.27 15 24 H 0.08 3.24 8.14 -2.39 -0.02 3.22 15 25 H 0.05 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 15 27 H 0.38 10.97 9.09 -74.06 -0.67 10.30 15 28 H 0.04 1.72 7.56 -2.39 -0.02 1.70 15 29 H 0.12 3.22 8.14 -2.39 -0.02 3.20 15 Total: -1.00 -70.89 245.19 1.21 -69.68 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.46 Total: 14.00 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 2.84 Total: -14.76 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.28 Total: -56.96 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -4.40 Total: -59.83 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -70.89 1.21 -69.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307576226.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.713 kcal (2) G-P(sol) polarization free energy of solvation -70.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds