Wall clock time and date at job start Mon Mar 30 2020 02:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99973 * 2 1 4 4 H 1.48495 * 109.46863 * 269.99666 * 3 2 1 5 5 H 1.48500 * 109.46750 * 29.99887 * 3 2 1 6 6 H 1.48501 * 109.46834 * 149.99843 * 3 2 1 7 7 C 1.37883 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99700 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.78834 * 299.99260 * 9 7 2 11 11 C 1.53431 * 109.79331 * 179.19705 * 9 7 2 12 12 C 1.52853 * 108.84576 * 177.16982 * 11 9 7 13 13 C 1.50603 * 110.48420 * 51.34106 * 12 11 9 14 14 C 1.38503 * 118.93041 * 159.36631 * 13 12 11 15 15 C 1.38124 * 120.30309 * 179.85449 * 14 13 12 16 16 C 1.38301 * 120.16541 * 359.97438 * 15 14 13 17 17 C 1.38026 * 119.91061 * 0.07639 * 16 15 14 18 18 C 1.38604 * 121.50330 * 339.31702 * 13 12 11 19 19 N 1.39924 * 120.83715 * 0.52136 * 18 13 12 20 20 H 0.96993 * 120.00010 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.57607 * 296.97761 * 11 9 7 22 22 H 1.08996 * 109.57406 * 57.23142 * 11 9 7 23 23 H 1.08991 * 109.30668 * 171.65505 * 12 11 9 24 24 H 1.08999 * 109.29872 * 291.24250 * 12 11 9 25 25 H 1.07998 * 119.84979 * 359.87738 * 14 13 12 26 26 H 1.08001 * 119.91779 * 180.02562 * 15 14 13 27 27 H 1.07998 * 120.04978 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.98721 * 180.02562 * 17 16 15 29 29 H 0.97001 * 120.53723 * 166.47086 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6222 -2.5622 0.8886 11 6 2.2414 -3.6709 -0.0191 12 6 1.4576 -4.9812 0.0527 13 6 0.3775 -5.0073 -0.9965 14 6 -0.1474 -6.2279 -1.3875 15 6 -1.1411 -6.2847 -2.3452 16 6 -1.6192 -5.1213 -2.9204 17 6 -1.1009 -3.9007 -2.5374 18 6 -0.0994 -3.8412 -1.5743 19 7 0.4187 -2.5945 -1.2064 20 1 -0.4850 0.8400 -0.0004 21 1 2.8222 -3.6428 -0.9410 22 1 2.9118 -3.5968 0.8372 23 1 2.1376 -5.8173 -0.1095 24 1 1.0008 -5.0742 1.0380 25 1 0.2216 -7.1395 -0.9412 26 1 -1.5462 -7.2398 -2.6452 27 1 -2.3964 -5.1678 -3.6688 28 1 -1.4737 -2.9915 -2.9854 29 1 0.2311 -1.8060 -1.7393 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032169126.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:53 Heat of formation + Delta-G solvation = -6.016932 kcal Electronic energy + Delta-G solvation = -12760.612512 eV Core-core repulsion = 10646.710497 eV Total energy + Delta-G solvation = -2113.902014 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.61384 -37.31893 -34.59674 -33.82738 -31.23852 -30.03044 -27.53086 -24.75771 -23.32061 -23.04379 -20.19533 -18.77836 -17.81227 -16.62172 -16.55086 -16.15791 -15.22644 -14.77078 -14.40702 -14.24291 -14.08022 -13.75288 -13.30581 -12.99016 -12.83225 -12.38544 -12.28464 -11.94659 -11.78897 -11.37690 -10.99246 -10.80042 -10.43168 -9.44256 -8.25129 -7.84269 -6.44457 0.68184 0.98559 1.39399 1.41176 1.51707 2.35831 2.85543 3.14779 3.42916 4.05611 4.17575 4.37871 4.40605 4.46120 4.69190 4.82776 4.87489 4.96425 5.11091 5.12756 5.31459 5.41452 5.52942 5.69264 5.73851 5.82142 5.90024 6.02768 6.32441 6.61380 7.06237 7.29128 7.41338 8.81048 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.053573 B = 0.009703 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.521283 B = 2884.942519 C = 3285.487465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.066 0.934 9 C 0.271 3.729 10 H -0.013 1.013 11 C -0.119 4.119 12 C -0.064 4.064 13 C -0.192 4.192 14 C -0.075 4.075 15 C -0.200 4.200 16 C -0.078 4.078 17 C -0.231 4.231 18 C 0.201 3.799 19 N -0.721 5.721 20 H 0.266 0.734 21 H 0.048 0.952 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.106 0.894 29 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 -8.820 -3.128 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.084 0.916 9 C 0.168 3.832 10 H 0.005 0.995 11 C -0.157 4.157 12 C -0.101 4.101 13 C -0.197 4.197 14 C -0.094 4.094 15 C -0.221 4.221 16 C -0.097 4.097 17 C -0.254 4.254 18 C 0.093 3.907 19 N -0.345 5.345 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.158 0.842 26 H 0.160 0.840 27 H 0.157 0.843 28 H 0.124 0.876 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.079 -8.664 -2.914 9.141 hybrid contribution 0.044 1.646 -0.109 1.650 sum 0.122 -7.018 -3.023 7.642 Atomic orbital electron populations 1.70102 1.07359 1.27918 1.49383 1.25905 0.95671 1.02877 0.93297 0.85465 0.78725 0.78556 0.78340 1.19987 1.20931 1.18949 1.21596 0.93611 0.91220 1.52486 0.91611 1.18593 0.87772 0.93496 0.83350 0.99535 1.21789 0.97953 0.94895 1.01068 1.20288 0.95300 0.97962 0.96500 1.19585 1.03168 0.92267 1.04682 1.21094 0.95786 0.96177 0.96307 1.21028 1.01280 0.98614 1.01133 1.21076 0.98506 0.91521 0.98568 1.20815 1.01311 0.98995 1.04321 1.18398 0.91653 0.87162 0.93476 1.45848 1.54107 1.05455 1.29063 0.92546 0.93272 0.91103 0.89256 0.92083 0.84214 0.84014 0.84323 0.87618 0.77685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.53 12.37 21.45 0.27 -51.27 15 2 C 0.02 1.30 5.21 84.66 0.44 1.74 15 3 Si 0.96 42.21 29.54 68.60 2.03 44.24 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 7 C -0.55 -29.73 8.71 25.60 0.22 -29.51 15 8 H 0.07 3.45 7.75 -2.91 -0.02 3.43 15 9 C 0.27 13.89 2.76 44.31 0.12 14.01 15 10 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 15 11 C -0.12 -5.00 5.36 30.69 0.16 -4.84 15 12 C -0.06 -2.30 5.78 29.77 0.17 -2.13 15 13 C -0.19 -7.47 5.76 -19.74 -0.11 -7.58 15 14 C -0.08 -2.38 9.66 22.31 0.22 -2.17 15 15 C -0.20 -5.89 10.04 22.26 0.22 -5.67 15 16 C -0.08 -2.50 10.05 22.23 0.22 -2.28 15 17 C -0.23 -9.11 9.88 22.42 0.22 -8.88 15 18 C 0.20 8.88 6.48 38.14 0.25 9.13 15 19 N -0.72 -35.96 5.26 -320.86 -1.69 -37.65 15 20 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 21 H 0.05 2.10 8.14 -2.38 -0.02 2.08 15 22 H 0.07 2.78 8.14 -2.39 -0.02 2.76 15 23 H 0.09 2.65 8.12 -2.39 -0.02 2.63 15 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.14 3.49 8.06 -2.91 -0.02 3.46 15 26 H 0.14 3.15 8.06 -2.91 -0.02 3.12 15 27 H 0.14 3.49 8.06 -2.91 -0.02 3.47 15 28 H 0.11 4.13 8.06 -2.91 -0.02 4.10 15 29 H 0.39 20.52 7.73 -92.71 -0.72 19.81 15 Total: -1.00 -59.38 244.87 3.16 -56.21 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.42 Total: 26.63 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 2.14 Total: -38.17 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -1.42 Total: -88.91 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -59.38 3.16 -56.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032169126.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.195 kcal (2) G-P(sol) polarization free energy of solvation -59.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds