Wall clock time and date at job start Mon Mar 30 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48495 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47318 * 300.00205 * 3 2 1 6 6 H 1.48497 * 109.47148 * 60.00036 * 3 2 1 7 7 C 1.38810 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00007 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99830 * 180.02562 * 9 7 2 11 11 H 1.08998 * 115.56257 * 350.69142 * 10 9 7 12 12 C 1.52999 * 117.49730 * 136.38323 * 10 9 7 13 13 C 1.52999 * 60.00114 * 107.49052 * 12 10 9 14 14 H 1.08996 * 117.49892 * 107.51389 * 13 12 10 15 15 C 1.50701 * 117.49776 * 252.50928 * 13 12 10 16 16 C 1.38231 * 119.99846 * 8.51977 * 15 13 12 17 17 C 1.38243 * 120.00070 * 179.97438 * 16 15 13 18 18 C 1.38235 * 119.99602 * 0.07188 * 17 16 15 19 19 C 1.38230 * 120.00326 * 359.97438 * 18 17 16 20 20 C 1.38234 * 120.00257 * 188.60527 * 15 13 12 21 21 H 0.96996 * 119.99586 * 0.02562 * 1 2 3 22 22 H 0.96993 * 119.99830 * 0.02562 * 9 7 2 23 23 H 1.08999 * 117.49751 * 359.97438 * 12 10 9 24 24 H 1.09006 * 117.49699 * 214.98368 * 12 10 9 25 25 H 1.08001 * 120.00367 * 0.08711 * 16 15 13 26 26 H 1.08000 * 119.99728 * 180.34119 * 17 16 15 27 27 H 1.08000 * 119.99297 * 179.97438 * 18 17 16 28 28 H 1.08001 * 120.00371 * 179.97438 * 19 18 17 29 29 H 1.07999 * 119.99751 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.1336 -3.5789 -0.1596 12 6 1.5604 -4.7598 0.9357 13 6 1.3461 -4.8836 -0.5742 14 1 1.9530 -5.6130 -1.1105 15 6 -0.0549 -4.6943 -1.0960 16 6 -1.0531 -4.2485 -0.2501 17 6 -2.3383 -4.0744 -0.7288 18 6 -2.6254 -4.3476 -2.0531 19 6 -1.6274 -4.7944 -2.8988 20 6 -0.3423 -4.9683 -2.4201 21 1 -0.4849 0.8400 -0.0004 22 1 0.3557 -2.3880 -0.0005 23 1 0.6882 -4.5413 1.5519 24 1 2.3086 -5.4076 1.3927 25 1 -0.8287 -4.0344 0.7845 26 1 -3.1169 -3.7207 -0.0692 27 1 -3.6295 -4.2120 -2.4270 28 1 -1.8518 -5.0083 -3.9334 29 1 0.4374 -5.3176 -3.0807 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044677177.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:46 Heat of formation + Delta-G solvation = 40.648476 kcal Electronic energy + Delta-G solvation = -12547.710701 eV Core-core repulsion = 10435.832251 eV Total energy + Delta-G solvation = -2111.878450 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.50673 -38.02319 -35.16479 -32.11409 -31.67148 -30.94027 -25.96866 -24.57621 -23.46985 -22.00866 -20.90646 -19.39107 -17.86117 -16.71502 -16.29619 -15.97549 -15.39010 -15.23885 -14.49674 -14.23049 -13.85701 -13.56238 -13.02459 -12.98923 -12.59799 -12.37087 -12.13992 -11.92761 -11.78298 -11.71902 -11.18587 -10.76743 -9.71502 -9.42971 -8.78972 -7.98658 -5.26842 0.55366 0.59429 1.46860 1.47882 1.58395 2.52647 2.85543 3.25720 3.53996 3.72833 4.02358 4.06630 4.20331 4.31994 4.35373 4.40396 4.53333 4.68519 4.81928 5.01681 5.09413 5.23918 5.26435 5.35857 5.49687 5.66863 5.70297 5.86569 6.23004 6.23684 7.29289 8.04571 8.28603 9.24255 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.034190 B = 0.010278 C = 0.008824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.750285 B = 2723.483742 C = 3172.459080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.074 4.074 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.253 4.253 8 H 0.084 0.916 9 N -0.706 5.706 10 C 0.124 3.876 11 H 0.116 0.884 12 C -0.207 4.207 13 C -0.153 4.153 14 H 0.130 0.870 15 C -0.047 4.047 16 C -0.137 4.137 17 C -0.127 4.127 18 C -0.140 4.140 19 C -0.123 4.123 20 C -0.134 4.134 21 H 0.252 0.748 22 H 0.382 0.618 23 H 0.075 0.925 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.828 -10.474 -3.288 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.267 4.267 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.384 4.384 8 H 0.102 0.898 9 N -0.341 5.341 10 C 0.012 3.988 11 H 0.134 0.866 12 C -0.248 4.248 13 C -0.174 4.174 14 H 0.148 0.852 15 C -0.047 4.047 16 C -0.155 4.155 17 C -0.145 4.145 18 C -0.158 4.158 19 C -0.140 4.140 20 C -0.152 4.152 21 H 0.061 0.939 22 H 0.217 0.783 23 H 0.094 0.906 24 H 0.135 0.865 25 H 0.123 0.877 26 H 0.144 0.856 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.680 -10.278 -3.288 10.813 hybrid contribution -0.232 1.041 0.248 1.095 sum -0.913 -9.238 -3.039 9.768 Atomic orbital electron populations 1.69864 1.06765 1.26165 1.58745 1.25674 0.96452 1.01402 1.03158 0.84990 0.78349 0.79275 0.76613 1.18636 1.22066 1.21958 1.19806 0.91883 0.84903 1.41857 0.89848 1.42312 1.06083 1.00329 1.85414 1.21341 0.95232 0.81588 1.00675 0.86584 1.23641 1.03985 1.05639 0.91503 1.21808 0.94701 1.04316 0.96602 0.85222 1.19298 0.93703 0.97466 0.94234 1.21094 0.93905 1.00737 0.99796 1.21330 0.96573 0.99617 0.97012 1.21380 1.00572 1.00431 0.93428 1.21423 0.92756 0.99246 1.00626 1.21192 0.97691 1.01670 0.94635 0.93927 0.78334 0.90635 0.86506 0.87741 0.85575 0.83943 0.83477 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.03 13.06 21.65 0.28 -59.75 15 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 15 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 15 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 15 7 C -0.25 -14.28 9.98 84.03 0.84 -13.44 15 8 H 0.08 4.43 7.82 -2.91 -0.02 4.41 15 9 N -0.71 -36.98 5.37 -322.94 -1.74 -38.72 15 10 C 0.12 5.08 6.57 44.99 0.30 5.38 15 11 H 0.12 4.40 8.12 -2.39 -0.02 4.38 15 12 C -0.21 -7.15 9.78 30.59 0.30 -6.85 15 13 C -0.15 -5.33 6.04 -11.54 -0.07 -5.40 15 14 H 0.13 3.70 8.14 -2.39 -0.02 3.68 15 15 C -0.05 -1.74 5.17 -19.87 -0.10 -1.84 15 16 C -0.14 -5.38 7.46 22.27 0.17 -5.22 15 17 C -0.13 -4.51 10.05 22.27 0.22 -4.28 15 18 C -0.14 -4.33 10.05 22.27 0.22 -4.10 15 19 C -0.12 -3.65 10.05 22.27 0.22 -3.43 15 20 C -0.13 -4.40 9.74 22.27 0.22 -4.18 15 21 H 0.25 15.10 8.31 -92.71 -0.77 14.33 15 22 H 0.38 21.30 5.39 -92.71 -0.50 20.80 15 23 H 0.08 2.83 6.18 -2.39 -0.01 2.82 15 24 H 0.12 3.26 8.14 -2.38 -0.02 3.24 15 25 H 0.10 4.32 5.83 -2.91 -0.02 4.31 15 26 H 0.13 4.03 8.06 -2.91 -0.02 4.00 15 27 H 0.14 3.46 8.06 -2.91 -0.02 3.44 15 28 H 0.15 3.31 8.06 -2.91 -0.02 3.29 15 29 H 0.14 3.75 8.06 -2.91 -0.02 3.73 15 Total: -1.00 -66.01 249.86 4.00 -62.01 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.64 Total: 35.30 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 2.78 Total: -47.22 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -1.45 Total: -98.47 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -66.01 4.00 -62.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044677177.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.662 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds