Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12397 * 1 3 3 N 1.12409 * 179.97438 * 2 1 4 4 C 1.46499 * 119.99932 * 63.92791 * 3 2 1 5 5 H 1.09000 * 109.46810 * 305.81514 * 4 3 2 6 6 C 1.50700 * 109.46999 * 65.81420 * 4 3 2 7 7 H 1.07995 * 120.00393 * 33.19395 * 6 4 3 8 8 C 1.37883 * 119.99938 * 213.19034 * 6 4 3 9 9 N 1.31513 * 120.00118 * 3.90621 * 8 6 4 10 10 Si 1.86798 * 119.99960 * 183.90792 * 8 6 4 11 11 H 1.48500 * 109.47191 * 270.00081 * 10 8 6 12 12 H 1.48498 * 109.47072 * 30.00301 * 10 8 6 13 13 H 1.48498 * 109.47170 * 150.00153 * 10 8 6 14 14 C 1.50693 * 109.46995 * 185.81286 * 4 3 2 15 15 C 1.38231 * 120.00276 * 319.73095 * 14 4 3 16 16 C 1.38243 * 120.00064 * 179.78623 * 15 14 4 17 17 C 1.38233 * 119.99795 * 0.43852 * 16 15 14 18 18 C 1.38233 * 120.00174 * 359.81346 * 17 16 15 19 19 C 1.38234 * 119.99884 * 359.97438 * 18 17 16 20 20 H 0.97002 * 119.99994 * 354.05300 * 9 8 6 21 21 H 1.08003 * 120.00076 * 359.97438 * 15 14 4 22 22 H 1.08003 * 119.99692 * 180.27293 * 16 15 14 23 23 H 1.08004 * 119.99544 * 179.83285 * 17 16 15 24 24 H 1.07999 * 120.00028 * 180.02562 * 18 17 16 25 25 H 1.08004 * 120.00016 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2481 0.0005 0.0000 4 6 2.9808 -0.5568 -1.1396 5 1 2.6421 -1.5759 -1.3260 6 6 2.7274 0.2882 -2.3614 7 1 2.5793 1.3532 -2.2603 8 6 2.6848 -0.2983 -3.6086 9 7 2.7884 -1.6042 -3.7250 10 14 2.4799 0.7619 -5.1328 11 1 1.0345 0.9233 -5.4329 12 1 3.0877 2.0955 -4.8935 13 1 3.1546 0.1097 -6.2837 14 6 4.4560 -0.5659 -0.8323 15 6 5.0318 0.5051 -0.1750 16 6 6.3843 0.4947 0.1108 17 6 7.1627 -0.5828 -0.2687 18 6 6.5879 -1.6516 -0.9307 19 6 5.2346 -1.6431 -1.2126 20 1 2.9810 -2.1469 -2.9444 21 1 4.4245 1.3488 0.1180 22 1 6.8333 1.3296 0.6283 23 1 8.2198 -0.5897 -0.0478 24 1 7.1959 -2.4935 -1.2269 25 1 4.7854 -2.4783 -1.7294 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055019620.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = 98.961249 kcal Electronic energy + Delta-G solvation = -12322.489792 eV Core-core repulsion = 10109.599630 eV Total energy + Delta-G solvation = -2212.890162 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.40047 -40.05296 -37.43075 -35.40529 -32.61677 -31.64912 -28.77022 -25.78147 -23.40886 -22.52526 -20.43904 -19.12594 -18.71036 -18.24755 -17.17048 -16.60207 -15.87933 -15.74774 -15.35432 -14.98623 -14.10440 -13.96986 -13.66333 -13.14382 -12.74109 -12.03006 -11.97393 -11.89744 -11.46164 -10.83653 -10.77932 -9.82318 -9.69129 -9.40795 -8.80113 -6.66385 0.38174 0.62930 0.79297 1.47108 1.54507 1.63981 1.73335 2.41870 2.52238 2.93181 3.11065 4.06219 4.16930 4.27151 4.38204 4.47303 4.70833 4.83291 4.95544 5.20478 5.29600 5.50777 5.69510 5.71124 5.84739 6.02206 6.22760 6.32854 7.11223 8.49931 8.82000 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.014694 C = 0.010634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.216670 B = 1905.077043 C = 2632.399791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.234 5.234 2 N 0.291 4.709 3 N -0.377 5.377 4 C 0.246 3.754 5 H 0.027 0.973 6 C -0.624 4.624 7 H 0.054 0.946 8 C -0.005 4.005 9 N -0.909 5.909 10 Si 1.112 2.888 11 H -0.273 1.273 12 H -0.270 1.270 13 H -0.275 1.275 14 C -0.052 4.052 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.121 4.121 19 C -0.140 4.140 20 H 0.264 0.736 21 H 0.112 0.888 22 H 0.147 0.853 23 H 0.154 0.846 24 H 0.142 0.858 25 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.164 2.020 4.324 8.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.226 5.226 2 N 0.293 4.707 3 N -0.294 5.294 4 C 0.141 3.859 5 H 0.045 0.955 6 C -0.663 4.663 7 H 0.072 0.928 8 C -0.208 4.208 9 N -0.544 5.544 10 Si 0.932 3.068 11 H -0.199 1.199 12 H -0.195 1.195 13 H -0.200 1.200 14 C -0.054 4.054 15 C -0.133 4.133 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.139 4.139 19 C -0.159 4.159 20 H 0.076 0.924 21 H 0.130 0.870 22 H 0.165 0.835 23 H 0.171 0.829 24 H 0.160 0.840 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.559 2.137 3.164 7.589 hybrid contribution -0.108 -0.383 1.108 1.177 sum 6.450 1.754 4.272 7.933 Atomic orbital electron populations 1.87374 0.89033 1.37336 1.08873 1.41262 1.01853 1.12419 1.15168 1.70752 0.88611 1.39923 1.30115 1.18800 0.88816 0.94141 0.84152 0.95515 1.22334 1.55518 0.95812 0.92666 0.92766 1.27254 0.91642 0.97709 1.04242 1.70918 1.43982 1.05284 1.34170 0.82998 0.77843 0.73915 0.72020 1.19861 1.19486 1.19995 1.19790 0.94376 0.94822 0.96426 1.20962 0.95773 0.97617 0.98985 1.21425 0.92860 0.99511 1.00205 1.21402 1.00932 0.93516 0.99166 1.21302 0.93610 0.99905 0.99084 1.20985 0.95517 0.97858 1.01514 0.92400 0.86967 0.83514 0.82875 0.84009 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.23 -9.96 20.57 37.02 0.76 -9.20 15 2 N 0.29 13.00 10.03 37.02 0.37 13.37 15 3 N -0.38 -17.29 10.25 -175.70 -1.80 -19.09 15 4 C 0.25 12.15 2.69 43.50 0.12 12.27 15 5 H 0.03 1.44 6.16 -2.39 -0.01 1.43 15 6 C -0.62 -33.40 8.37 25.60 0.21 -33.18 15 7 H 0.05 2.96 7.82 -2.91 -0.02 2.94 15 8 C -0.01 -0.29 5.46 84.66 0.46 0.18 15 9 N -0.91 -51.27 13.62 21.45 0.29 -50.98 15 10 Si 1.11 47.96 29.91 68.60 2.05 50.01 15 11 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 14 C -0.05 -2.30 4.94 -19.87 -0.10 -2.40 15 15 C -0.11 -4.50 9.32 22.27 0.21 -4.29 15 16 C -0.12 -3.79 10.05 22.27 0.22 -3.56 15 17 C -0.13 -3.76 10.05 22.27 0.22 -3.54 15 18 C -0.12 -3.93 10.05 22.27 0.22 -3.71 15 19 C -0.14 -5.72 9.66 22.27 0.22 -5.51 15 20 H 0.26 14.86 5.75 -92.71 -0.53 14.33 15 21 H 0.11 4.44 7.73 -2.91 -0.02 4.41 15 22 H 0.15 3.48 8.06 -2.91 -0.02 3.46 15 23 H 0.15 3.09 8.06 -2.91 -0.02 3.07 15 24 H 0.14 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.10 4.31 7.29 -2.91 -0.02 4.29 15 Total: -1.00 -58.69 235.17 4.90 -53.79 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.44 Total: 5.85 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 1.79 Total: -43.75 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.38 Total: -65.89 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.05 Total: 50.01 kcal Total: -58.69 4.90 -53.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055019620.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.748 kcal (2) G-P(sol) polarization free energy of solvation -58.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds