Wall clock time and date at job start Mon Mar 30 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47187 * 274.55583 * 3 2 1 5 5 H 1.48496 * 109.47156 * 34.56046 * 3 2 1 6 6 H 1.48508 * 109.46783 * 154.55856 * 3 2 1 7 7 C 1.40047 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00109 * 163.45905 * 7 2 1 9 9 C 1.41510 * 119.99749 * 343.72345 * 7 2 1 10 10 C 1.40864 * 120.82339 * 334.63035 * 9 7 2 11 11 C 1.37714 * 118.51139 * 179.79092 * 10 9 7 12 12 N 1.31677 * 120.88237 * 0.61754 * 11 10 9 13 13 C 1.32882 * 123.03857 * 359.73481 * 12 11 10 14 14 C 1.37147 * 120.22458 * 359.77199 * 13 12 11 15 15 C 1.50450 * 122.98942 * 180.61889 * 14 13 12 16 16 C 1.52777 * 110.57385 * 342.47277 * 15 14 13 17 17 C 1.53332 * 108.32322 * 50.71478 * 16 15 14 18 18 C 1.50754 * 117.48316 * 179.65522 * 13 12 11 19 19 H 0.97004 * 120.00058 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.74703 * 0.02562 * 10 9 7 21 21 H 1.07993 * 119.56268 * 180.32701 * 11 10 9 22 22 H 1.09000 * 109.25192 * 102.74869 * 15 14 13 23 23 H 1.08993 * 109.25463 * 222.18372 * 15 14 13 24 24 H 1.08998 * 109.69252 * 170.42430 * 16 15 14 25 25 H 1.09003 * 109.68853 * 291.00634 * 16 15 14 26 26 H 1.08999 * 109.67189 * 50.02738 * 17 16 15 27 27 H 1.08993 * 109.67259 * 170.55942 * 17 16 15 28 28 H 1.08999 * 109.25665 * 41.82662 * 18 13 12 29 29 H 1.09002 * 109.22291 * 282.38185 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3925 2.1020 -1.3956 5 1 1.4903 2.6229 0.7942 6 1 3.5838 1.4142 0.6015 7 6 2.0076 -1.2129 -0.0005 8 1 3.0541 -1.2321 -0.2668 9 6 1.3425 -2.4139 0.3424 10 6 0.2015 -2.3967 1.1683 11 6 -0.4110 -3.5931 1.4683 12 7 0.0642 -4.7305 1.0051 13 6 1.1403 -4.8036 0.2290 14 6 1.8107 -3.6625 -0.1310 15 6 3.0266 -3.6718 -1.0170 16 6 3.6336 -5.0724 -1.0810 17 6 2.5176 -6.0662 -1.4245 18 6 1.5797 -6.1727 -0.2239 19 1 -0.4850 0.8401 0.0004 20 1 -0.1866 -1.4657 1.5544 21 1 -1.2900 -3.5991 2.0956 22 1 2.7420 -3.3572 -2.0211 23 1 3.7664 -2.9771 -0.6195 24 1 4.4037 -5.1041 -1.8517 25 1 4.0690 -5.3284 -0.1151 26 1 1.9633 -5.7098 -2.2927 27 1 2.9499 -7.0432 -1.6403 28 1 0.7033 -6.7573 -0.5035 29 1 2.0987 -6.6720 0.5943 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059599667.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:50 Heat of formation + Delta-G solvation = -2.029044 kcal Electronic energy + Delta-G solvation = -12852.679399 eV Core-core repulsion = 10738.950313 eV Total energy + Delta-G solvation = -2113.729087 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.94489 -35.48643 -34.16608 -31.47970 -29.13971 -28.51904 -25.83366 -22.98964 -21.94422 -20.69930 -18.81997 -17.06693 -15.71970 -14.74963 -14.63322 -14.23395 -13.15630 -13.01000 -12.98191 -12.60403 -12.15594 -11.75805 -11.47859 -11.32693 -11.15886 -10.77278 -10.55373 -10.29456 -10.22363 -9.89902 -9.38462 -9.31804 -7.85851 -7.82497 -7.29533 -6.82254 -4.55177 2.75951 2.82702 3.02178 3.06683 3.25203 3.85991 4.64675 5.34194 5.49859 5.52081 5.57612 5.86865 6.13763 6.22903 6.26339 6.31214 6.44279 6.52178 6.67812 6.74256 6.80530 6.98842 7.00786 7.10395 7.29289 7.44210 7.64425 7.91199 8.15272 8.49708 8.77137 8.80390 9.70292 10.09539 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.011775 C = 0.009467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.232379 B = 2377.328889 C = 2956.976180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.129 3.871 10 C -0.221 4.221 11 C 0.088 3.912 12 N -0.581 5.581 13 C 0.128 3.872 14 C -0.226 4.226 15 C -0.048 4.048 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.057 4.057 19 H 0.282 0.718 20 H 0.123 0.877 21 H 0.118 0.882 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -2.853 -1.523 5.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.121 3.879 10 C -0.244 4.244 11 C -0.065 4.065 12 N -0.296 5.296 13 C -0.005 4.005 14 C -0.231 4.231 15 C -0.085 4.085 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.095 4.095 19 H 0.093 0.907 20 H 0.141 0.859 21 H 0.135 0.865 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.566 -3.477 -1.298 5.147 hybrid contribution 0.557 1.776 -0.187 1.871 sum 4.123 -1.701 -1.484 4.701 Atomic orbital electron populations 1.69788 1.07720 1.29423 1.34306 1.25960 0.94732 1.01447 0.92012 0.86286 0.80758 0.80505 0.79153 1.19454 1.19950 1.18316 1.19610 0.97668 0.90636 1.40703 0.89874 1.17799 0.90727 0.91708 0.87635 1.22100 1.00958 0.97934 1.03398 1.21869 0.97909 0.88808 0.97879 1.67188 1.15430 1.29938 1.17063 1.20224 0.91997 0.93214 0.95054 1.20176 1.02198 0.93722 1.06974 1.19969 0.95230 0.94990 0.98347 1.21574 0.97051 0.96348 1.00579 1.21498 0.97023 0.98478 0.98191 1.20138 0.98420 0.94017 0.96892 0.90706 0.85948 0.86464 0.92670 0.92080 0.92778 0.92424 0.92046 0.92521 0.91581 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.11 10.98 55.55 0.61 -19.50 15 2 C 0.08 1.92 5.19 -17.34 -0.09 1.83 15 3 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 15 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 7 C -0.46 -11.81 8.44 -37.66 -0.32 -12.13 15 8 H 0.08 2.05 6.41 -52.49 -0.34 1.72 15 9 C 0.13 3.46 5.60 -106.41 -0.60 2.87 15 10 C -0.22 -5.87 8.78 -38.78 -0.34 -6.21 15 11 C 0.09 2.22 11.17 -17.81 -0.20 2.02 15 12 N -0.58 -14.66 10.16 -9.67 -0.10 -14.76 15 13 C 0.13 3.06 6.62 -82.51 -0.55 2.51 15 14 C -0.23 -5.55 5.79 -103.90 -0.60 -6.15 15 15 C -0.05 -0.98 5.04 -28.12 -0.14 -1.13 15 16 C -0.12 -1.99 5.99 -26.67 -0.16 -2.15 15 17 C -0.11 -1.86 5.97 -26.70 -0.16 -2.02 15 18 C -0.06 -1.08 5.91 -28.00 -0.17 -1.24 15 19 H 0.28 6.53 8.29 -40.82 -0.34 6.19 15 20 H 0.12 3.29 6.29 -52.49 -0.33 2.96 15 21 H 0.12 2.59 8.06 -52.49 -0.42 2.17 15 22 H 0.05 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.06 1.26 6.69 -51.93 -0.35 0.91 15 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.06 0.96 8.10 -51.93 -0.42 0.54 15 26 H 0.06 1.03 8.10 -51.93 -0.42 0.61 15 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 LS Contribution 239.20 15.07 3.60 3.60 Total: -1.00 -28.17 239.20 -7.76 -35.93 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.53 Total: 3.32 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.32 Total: -21.81 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.51 Total: -34.26 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.17 -7.76 -35.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059599667.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.900 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds