Wall clock time and date at job start Mon Mar 30 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86799 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47187 * 274.55583 * 3 2 1 5 5 H 1.48496 * 109.47156 * 34.56046 * 3 2 1 6 6 H 1.48508 * 109.46783 * 154.55856 * 3 2 1 7 7 C 1.40047 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00109 * 163.45905 * 7 2 1 9 9 C 1.41510 * 119.99749 * 343.72345 * 7 2 1 10 10 C 1.40864 * 120.82339 * 334.63035 * 9 7 2 11 11 C 1.37714 * 118.51139 * 179.79092 * 10 9 7 12 12 N 1.31677 * 120.88237 * 0.61754 * 11 10 9 13 13 C 1.32882 * 123.03857 * 359.73481 * 12 11 10 14 14 C 1.37147 * 120.22458 * 359.77199 * 13 12 11 15 15 C 1.50450 * 122.98942 * 180.61889 * 14 13 12 16 16 C 1.52777 * 110.57385 * 342.47277 * 15 14 13 17 17 C 1.53332 * 108.32322 * 50.71478 * 16 15 14 18 18 C 1.50754 * 117.48316 * 179.65522 * 13 12 11 19 19 H 0.97004 * 120.00058 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.74703 * 0.02562 * 10 9 7 21 21 H 1.07993 * 119.56268 * 180.32701 * 11 10 9 22 22 H 1.09000 * 109.25192 * 102.74869 * 15 14 13 23 23 H 1.08993 * 109.25463 * 222.18372 * 15 14 13 24 24 H 1.08998 * 109.69252 * 170.42430 * 16 15 14 25 25 H 1.09003 * 109.68853 * 291.00634 * 16 15 14 26 26 H 1.08999 * 109.67189 * 50.02738 * 17 16 15 27 27 H 1.08993 * 109.67259 * 170.55942 * 17 16 15 28 28 H 1.08999 * 109.25665 * 41.82662 * 18 13 12 29 29 H 1.09002 * 109.22291 * 282.38185 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3925 2.1020 -1.3956 5 1 1.4903 2.6229 0.7942 6 1 3.5838 1.4142 0.6015 7 6 2.0076 -1.2129 -0.0005 8 1 3.0541 -1.2321 -0.2668 9 6 1.3425 -2.4139 0.3424 10 6 0.2015 -2.3967 1.1683 11 6 -0.4110 -3.5931 1.4683 12 7 0.0642 -4.7305 1.0051 13 6 1.1403 -4.8036 0.2290 14 6 1.8107 -3.6625 -0.1310 15 6 3.0266 -3.6718 -1.0170 16 6 3.6336 -5.0724 -1.0810 17 6 2.5176 -6.0662 -1.4245 18 6 1.5797 -6.1727 -0.2239 19 1 -0.4850 0.8401 0.0004 20 1 -0.1866 -1.4657 1.5544 21 1 -1.2900 -3.5991 2.0956 22 1 2.7420 -3.3572 -2.0211 23 1 3.7664 -2.9771 -0.6195 24 1 4.4037 -5.1041 -1.8517 25 1 4.0690 -5.3284 -0.1151 26 1 1.9633 -5.7098 -2.2927 27 1 2.9499 -7.0432 -1.6403 28 1 0.7033 -6.7573 -0.5035 29 1 2.0987 -6.6720 0.5943 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059599667.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:50 Heat of formation + Delta-G solvation = -17.644418 kcal Electronic energy + Delta-G solvation = -12853.356533 eV Core-core repulsion = 10738.950313 eV Total energy + Delta-G solvation = -2114.406220 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.74801 -37.09348 -36.05530 -33.29347 -30.87274 -30.21039 -27.76682 -24.63121 -23.61086 -22.54654 -20.43271 -18.95572 -17.53594 -16.55451 -16.21172 -15.98744 -14.84945 -14.62133 -14.54308 -14.37347 -13.85068 -13.46326 -13.20189 -13.02220 -12.79534 -12.43480 -12.16618 -11.95308 -11.64029 -11.46423 -11.14080 -11.02885 -9.81541 -9.75788 -9.18533 -8.69371 -6.53022 0.88460 0.97144 1.37034 1.49920 1.55333 2.16798 2.75035 3.64385 3.77954 4.11323 4.14816 4.30438 4.51705 4.61081 4.79544 4.85496 4.92956 5.01901 5.09914 5.16120 5.19267 5.26994 5.36341 5.39028 5.55754 5.58354 5.77013 6.00570 6.22650 6.55628 6.82781 6.85942 7.76674 8.25443 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.011775 C = 0.009467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.232379 B = 2377.328889 C = 2956.976180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.481 4.481 8 H 0.088 0.912 9 C 0.097 3.903 10 C -0.249 4.249 11 C 0.082 3.918 12 N -0.596 5.596 13 C 0.115 3.885 14 C -0.245 4.245 15 C -0.046 4.046 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.056 4.056 19 H 0.291 0.709 20 H 0.109 0.891 21 H 0.139 0.861 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 -3.340 -2.282 6.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.179 1.179 7 C -0.511 4.511 8 H 0.106 0.894 9 C 0.089 3.911 10 C -0.272 4.272 11 C -0.072 4.072 12 N -0.311 5.311 13 C -0.017 4.017 14 C -0.249 4.249 15 C -0.084 4.084 16 C -0.148 4.148 17 C -0.145 4.145 18 C -0.094 4.094 19 H 0.101 0.899 20 H 0.127 0.873 21 H 0.157 0.843 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.035 -3.988 -2.064 6.746 hybrid contribution 0.045 1.896 0.055 1.898 sum 5.081 -2.091 -2.009 5.850 Atomic orbital electron populations 1.69846 1.09319 1.30920 1.34360 1.26894 0.95482 1.04848 0.90880 0.85137 0.79207 0.75538 0.79541 1.18481 1.19098 1.17930 1.19897 0.98058 0.91462 1.41701 0.89426 1.18290 0.91291 0.93329 0.88206 1.22098 1.02169 0.97982 1.04928 1.22212 0.98453 0.88567 0.97920 1.67317 1.16325 1.29673 1.17795 1.21060 0.91199 0.95464 0.93994 1.20671 1.03618 0.93241 1.07362 1.19987 0.93704 0.97808 0.96889 1.21557 0.97748 0.93574 1.01970 1.21508 0.96176 1.00435 0.96430 1.20271 0.99481 0.91063 0.98564 0.89864 0.87278 0.84327 0.93247 0.92714 0.89528 0.92131 0.92728 0.88438 0.91020 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.69 10.98 21.84 0.24 -42.45 15 2 C 0.04 1.77 5.19 85.29 0.44 2.21 15 3 Si 0.99 37.23 29.59 68.60 2.03 39.26 15 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 6 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 7 C -0.48 -25.45 8.44 23.52 0.20 -25.25 15 8 H 0.09 4.39 6.41 -2.91 -0.02 4.37 15 9 C 0.10 5.32 5.60 -21.02 -0.12 5.21 15 10 C -0.25 -13.70 8.78 22.79 0.20 -13.50 15 11 C 0.08 4.19 11.17 84.59 0.94 5.14 15 12 N -0.60 -30.17 10.16 -184.50 -1.87 -32.04 15 13 C 0.12 5.45 6.62 42.16 0.28 5.73 15 14 C -0.24 -12.10 5.79 -19.39 -0.11 -12.21 15 15 C -0.05 -1.87 5.04 29.70 0.15 -1.72 15 16 C -0.11 -3.40 5.99 30.63 0.18 -3.21 15 17 C -0.11 -3.15 5.97 30.61 0.18 -2.97 15 18 C -0.06 -2.00 5.91 29.77 0.18 -1.83 15 19 H 0.29 13.61 8.29 -92.71 -0.77 12.84 15 20 H 0.11 6.15 6.29 -2.91 -0.02 6.13 15 21 H 0.14 6.23 8.06 -2.91 -0.02 6.21 15 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.05 2.24 6.69 -2.39 -0.02 2.22 15 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.06 1.83 8.10 -2.39 -0.02 1.81 15 26 H 0.05 1.68 8.10 -2.39 -0.02 1.66 15 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 Total: -1.00 -61.57 239.20 4.06 -57.51 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 1.14 Total: 20.11 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 2.53 Total: -42.39 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -1.63 Total: -74.49 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -61.57 4.06 -57.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059599667.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.866 kcal (2) G-P(sol) polarization free energy of solvation -61.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds