Wall clock time and date at job start Mon Mar 30 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38188 * 120.08526 * 2 1 4 4 C 1.40538 * 119.88967 * 180.02562 * 3 2 1 5 5 N 1.32914 * 132.68672 * 180.31961 * 4 3 2 6 6 C 1.32425 * 109.73096 * 180.02562 * 5 4 3 7 7 N 1.31321 * 109.65371 * 359.61918 * 6 5 4 8 8 N 1.36683 * 119.99758 * 359.97438 * 4 3 2 9 9 C 1.37808 * 120.54759 * 0.02562 * 8 4 3 10 10 C 1.39541 * 120.01660 * 179.97438 * 9 8 4 11 11 H 1.08004 * 120.00256 * 25.41787 * 10 9 8 12 12 C 1.40396 * 120.00016 * 205.42252 * 10 9 8 13 13 N 1.30616 * 119.99637 * 18.13041 * 12 10 9 14 14 Si 1.86802 * 120.00099 * 198.13096 * 12 10 9 15 15 H 1.48505 * 109.47018 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47260 * 119.99746 * 14 12 10 17 17 H 1.48502 * 109.46814 * 239.99808 * 14 12 10 18 18 C 1.38731 * 120.07817 * 180.02562 * 2 1 3 19 19 H 1.09001 * 109.46918 * 89.99510 * 1 2 3 20 20 H 1.08991 * 109.47099 * 209.99712 * 1 2 3 21 21 H 1.09008 * 109.46570 * 330.00109 * 1 2 3 22 22 H 1.08001 * 120.05804 * 0.04584 * 3 2 1 23 23 H 1.08007 * 125.17273 * 179.88116 * 6 5 4 24 24 H 0.96995 * 119.99829 * 180.02562 * 13 12 10 25 25 H 1.07997 * 120.12133 * 359.97298 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1957 0.0000 4 6 3.6051 1.1909 -0.0005 5 7 4.5096 2.1648 0.0048 6 6 5.7272 1.6442 0.0007 7 7 5.6471 0.3334 0.0010 8 7 4.2844 0.0048 -0.0005 9 6 3.6027 -1.1928 -0.0005 10 6 4.3074 -2.3972 -0.0011 11 1 5.3094 -2.4368 0.4000 12 6 3.7139 -3.5575 -0.5231 13 7 2.6789 -3.4624 -1.3141 14 14 4.4045 -5.2373 -0.0863 15 1 5.5702 -5.0732 0.8191 16 1 3.3578 -6.0411 0.5944 17 1 4.8350 -5.9330 -1.3256 18 6 2.2023 -1.2005 -0.0005 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3633 -0.8899 0.5137 21 1 -0.3633 0.8901 0.5139 22 1 1.6621 2.1324 0.0007 23 1 6.6464 2.2114 0.0017 24 1 2.2686 -4.2640 -1.6744 25 1 1.6656 -2.1376 -0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063046475.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:53 Heat of formation + Delta-G solvation = 90.776490 kcal Electronic energy + Delta-G solvation = -12522.281911 eV Core-core repulsion = 10309.036831 eV Total energy + Delta-G solvation = -2213.245080 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00454 -36.79370 -34.34279 -32.45886 -30.31225 -28.94921 -26.42375 -25.89497 -22.41684 -20.77522 -20.35160 -17.38657 -16.49292 -15.70139 -15.21924 -14.61264 -13.99463 -13.43673 -13.06008 -12.72347 -12.26735 -11.85103 -11.77299 -11.45863 -11.07374 -10.86968 -10.67648 -10.48504 -9.83867 -9.64499 -9.37695 -8.82310 -8.04625 -7.37171 -7.03975 -4.89092 2.13036 2.49400 2.82331 2.83911 2.90923 3.51440 3.69642 3.84958 4.33914 5.03480 5.25791 5.63337 5.88533 6.07839 6.23955 6.35523 6.47427 6.57945 6.67559 6.92593 7.16938 7.33078 7.64727 7.67409 7.80675 7.91027 8.04170 8.23415 8.54054 9.36227 9.58086 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.032435 B = 0.013737 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.064358 B = 2037.789541 C = 2814.760886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.010 3.990 3 C -0.281 4.281 4 C 0.315 3.685 5 N -0.607 5.607 6 C 0.207 3.793 7 N -0.372 5.372 8 N -0.320 5.320 9 C 0.312 3.688 10 C -0.420 4.420 11 H 0.099 0.901 12 C 0.076 3.924 13 N -0.750 5.750 14 Si 0.930 3.070 15 H -0.254 1.254 16 H -0.264 1.264 17 H -0.267 1.267 18 C -0.255 4.255 19 H 0.066 0.934 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.118 0.882 23 H 0.202 0.798 24 H 0.294 0.706 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 -2.193 1.224 3.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.004 3.996 3 C -0.307 4.307 4 C 0.069 3.931 5 N -0.342 5.342 6 C -0.095 4.095 7 N -0.203 5.203 8 N -0.097 5.097 9 C 0.207 3.793 10 C -0.450 4.450 11 H 0.117 0.883 12 C -0.149 4.149 13 N -0.372 5.372 14 Si 0.752 3.248 15 H -0.177 1.177 16 H -0.189 1.189 17 H -0.192 1.192 18 C -0.279 4.279 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.136 0.864 23 H 0.218 0.782 24 H 0.106 0.894 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.018 -2.347 1.074 3.277 hybrid contribution 0.185 -0.678 0.000 0.703 sum -1.833 -3.025 1.075 3.697 Atomic orbital electron populations 1.20672 0.92083 1.01618 1.01658 1.19659 0.94964 0.92632 0.92315 1.19308 0.87554 0.97703 1.26087 1.21421 0.94485 0.81837 0.95401 1.70687 0.98388 1.30462 1.34674 1.25659 0.96803 0.89877 0.97192 1.78125 0.92752 1.15033 1.34383 1.48079 1.04452 1.07076 1.50105 1.17865 0.90155 0.81840 0.89481 1.19492 1.02641 0.90920 1.31987 0.88259 1.26126 0.94109 1.02517 0.92173 1.69740 1.16442 1.33186 1.17845 0.85880 0.80394 0.78670 0.79871 1.17677 1.18850 1.19194 1.20795 0.90290 0.97601 1.19221 0.91554 0.91982 0.92313 0.86371 0.78183 0.89431 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 10.02 36.01 0.36 -1.38 15 2 C 0.01 0.23 5.89 -104.46 -0.62 -0.39 15 3 C -0.28 -6.63 9.81 -38.73 -0.38 -7.01 15 4 C 0.32 8.28 7.88 -156.26 -1.23 7.05 15 5 N -0.61 -15.39 11.25 -14.00 -0.16 -15.55 15 6 C 0.21 4.79 12.98 -92.01 -1.19 3.60 15 7 N -0.37 -9.66 12.63 29.25 0.37 -9.29 15 8 N -0.32 -8.70 3.95 -10.14 -0.04 -8.74 15 9 C 0.31 8.26 6.45 -84.02 -0.54 7.72 15 10 C -0.42 -10.64 9.08 -38.28 -0.35 -10.99 15 11 H 0.10 2.54 7.92 -52.48 -0.42 2.12 15 12 C 0.08 1.72 5.10 -17.26 -0.09 1.63 15 13 N -0.75 -17.03 10.99 55.57 0.61 -16.42 15 14 Si 0.93 16.69 29.60 -169.99 -5.03 11.65 15 15 H -0.25 -4.63 7.11 56.52 0.40 -4.23 15 16 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 17 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 18 C -0.26 -6.19 8.34 -38.72 -0.32 -6.51 15 19 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 20 H 0.06 0.96 8.09 -51.93 -0.42 0.54 15 21 H 0.06 0.87 8.09 -51.92 -0.42 0.45 15 22 H 0.12 2.53 8.06 -52.49 -0.42 2.11 15 23 H 0.20 3.54 8.06 -52.48 -0.42 3.12 15 24 H 0.29 5.84 8.29 -40.82 -0.34 5.50 15 25 H 0.14 3.40 6.17 -52.49 -0.32 3.08 15 LS Contribution 228.09 15.07 3.44 3.44 Total: -1.00 -29.14 228.09 -7.15 -36.29 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -1.98 Total: 4.88 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -4.36 Total: -6.28 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.78 Total: -49.99 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.65 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.14 -7.15 -36.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046475.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.070 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds