Wall clock time and date at job start Mon Mar 30 2020 02:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38188 * 120.08526 * 2 1 4 4 C 1.40538 * 119.88967 * 180.02562 * 3 2 1 5 5 N 1.32914 * 132.68672 * 180.31961 * 4 3 2 6 6 C 1.32425 * 109.73096 * 180.02562 * 5 4 3 7 7 N 1.31321 * 109.65371 * 359.61918 * 6 5 4 8 8 N 1.36683 * 119.99758 * 359.97438 * 4 3 2 9 9 C 1.37808 * 120.54759 * 0.02562 * 8 4 3 10 10 C 1.39541 * 120.01660 * 179.97438 * 9 8 4 11 11 H 1.08004 * 120.00256 * 25.41787 * 10 9 8 12 12 C 1.40396 * 120.00016 * 205.42252 * 10 9 8 13 13 N 1.30616 * 119.99637 * 18.13041 * 12 10 9 14 14 Si 1.86802 * 120.00099 * 198.13096 * 12 10 9 15 15 H 1.48505 * 109.47018 * 359.97438 * 14 12 10 16 16 H 1.48491 * 109.47260 * 119.99746 * 14 12 10 17 17 H 1.48502 * 109.46814 * 239.99808 * 14 12 10 18 18 C 1.38731 * 120.07817 * 180.02562 * 2 1 3 19 19 H 1.09001 * 109.46918 * 89.99510 * 1 2 3 20 20 H 1.08991 * 109.47099 * 209.99712 * 1 2 3 21 21 H 1.09008 * 109.46570 * 330.00109 * 1 2 3 22 22 H 1.08001 * 120.05804 * 0.04584 * 3 2 1 23 23 H 1.08007 * 125.17273 * 179.88116 * 6 5 4 24 24 H 0.96995 * 119.99829 * 180.02562 * 13 12 10 25 25 H 1.07997 * 120.12133 * 359.97298 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1957 0.0000 4 6 3.6051 1.1909 -0.0005 5 7 4.5096 2.1648 0.0048 6 6 5.7272 1.6442 0.0007 7 7 5.6471 0.3334 0.0010 8 7 4.2844 0.0048 -0.0005 9 6 3.6027 -1.1928 -0.0005 10 6 4.3074 -2.3972 -0.0011 11 1 5.3094 -2.4368 0.4000 12 6 3.7139 -3.5575 -0.5231 13 7 2.6789 -3.4624 -1.3141 14 14 4.4045 -5.2373 -0.0863 15 1 5.5702 -5.0732 0.8191 16 1 3.3578 -6.0411 0.5944 17 1 4.8350 -5.9330 -1.3256 18 6 2.2023 -1.2005 -0.0005 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3633 -0.8899 0.5137 21 1 -0.3633 0.8901 0.5139 22 1 1.6621 2.1324 0.0007 23 1 6.6464 2.2114 0.0017 24 1 2.2686 -4.2640 -1.6744 25 1 1.6656 -2.1376 -0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046475.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:52 Heat of formation + Delta-G solvation = 74.531564 kcal Electronic energy + Delta-G solvation = -12522.986344 eV Core-core repulsion = 10309.036831 eV Total energy + Delta-G solvation = -2213.949513 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.89054 -38.60741 -36.09463 -34.27200 -32.11856 -30.82014 -28.02896 -27.74542 -24.26873 -22.59670 -22.16621 -19.22217 -18.34311 -17.52285 -16.90255 -16.51920 -15.68253 -15.11904 -14.79678 -14.13593 -13.91809 -13.58104 -13.42794 -12.97639 -12.75867 -12.49947 -12.31749 -12.14135 -11.62907 -11.43681 -11.12776 -10.75561 -9.89873 -9.10299 -8.91111 -6.77520 0.33559 0.60598 1.33775 1.39010 1.51412 1.76671 2.06853 2.11591 2.51689 3.17038 3.53665 3.89775 4.32440 4.49897 4.67731 4.76872 4.90160 4.95429 5.12176 5.18958 5.33624 5.53117 5.80296 5.85713 5.96534 6.07962 6.21551 6.39259 6.64212 7.46294 7.91286 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.032435 B = 0.013737 C = 0.009945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.064358 B = 2037.789541 C = 2814.760886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.015 3.985 3 C -0.292 4.292 4 C 0.286 3.714 5 N -0.624 5.624 6 C 0.213 3.787 7 N -0.407 5.407 8 N -0.340 5.340 9 C 0.278 3.722 10 C -0.447 4.447 11 H 0.083 0.917 12 C 0.045 3.955 13 N -0.768 5.768 14 Si 1.003 2.997 15 H -0.264 1.264 16 H -0.245 1.245 17 H -0.257 1.257 18 C -0.267 4.267 19 H 0.082 0.918 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.139 0.861 23 H 0.250 0.750 24 H 0.310 0.690 25 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -3.069 1.189 4.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.009 3.991 3 C -0.318 4.318 4 C 0.041 3.959 5 N -0.360 5.360 6 C -0.088 4.088 7 N -0.239 5.239 8 N -0.117 5.117 9 C 0.173 3.827 10 C -0.476 4.476 11 H 0.101 0.899 12 C -0.179 4.179 13 N -0.390 5.390 14 Si 0.820 3.180 15 H -0.188 1.188 16 H -0.168 1.168 17 H -0.181 1.181 18 C -0.291 4.291 19 H 0.100 0.900 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.156 0.844 23 H 0.265 0.735 24 H 0.122 0.878 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.032 -3.201 1.029 4.528 hybrid contribution 0.470 -0.368 -0.024 0.598 sum -2.562 -3.570 1.004 4.507 Atomic orbital electron populations 1.20749 0.87992 1.03556 1.03193 1.20184 0.97825 0.91245 0.89849 1.19734 0.86858 0.99198 1.26038 1.22059 0.95769 0.82040 0.96031 1.70708 0.99033 1.30539 1.35683 1.26584 0.97902 0.89375 0.94933 1.78037 0.93049 1.16592 1.36208 1.48256 1.04852 1.07526 1.51087 1.18443 0.91458 0.82188 0.90593 1.19665 1.02464 0.92189 1.33303 0.89883 1.26965 0.94293 1.05231 0.91401 1.69697 1.16717 1.35251 1.17355 0.84845 0.79641 0.73741 0.79727 1.18765 1.16793 1.18077 1.20957 0.89686 0.98639 1.19805 0.89960 0.90531 0.89951 0.84370 0.73452 0.87753 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.03 10.02 71.24 0.71 -2.32 15 2 C 0.02 0.65 5.89 -19.76 -0.12 0.53 15 3 C -0.29 -13.65 9.81 22.82 0.22 -13.42 15 4 C 0.29 15.20 7.88 134.03 1.06 16.26 15 5 N -0.62 -31.65 11.25 -198.21 -2.23 -33.88 15 6 C 0.21 9.85 12.98 180.84 2.35 12.20 15 7 N -0.41 -21.59 12.63 -61.38 -0.77 -22.36 15 8 N -0.34 -18.91 3.95 -185.98 -0.74 -19.65 15 9 C 0.28 15.09 6.45 38.96 0.25 15.34 15 10 C -0.45 -23.16 9.08 23.11 0.21 -22.95 15 11 H 0.08 4.43 7.92 -2.91 -0.02 4.41 15 12 C 0.05 2.01 5.10 85.40 0.44 2.44 15 13 N -0.77 -34.25 10.99 21.91 0.24 -34.01 15 14 Si 1.00 33.27 29.60 68.60 2.03 35.30 15 15 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15 16 H -0.24 -7.33 7.11 99.48 0.71 -6.63 15 17 H -0.26 -8.06 7.11 99.48 0.71 -7.35 15 18 C -0.27 -12.98 8.34 22.82 0.19 -12.79 15 19 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 20 H 0.08 2.14 8.09 -2.39 -0.02 2.12 15 21 H 0.08 2.16 8.09 -2.38 -0.02 2.14 15 22 H 0.14 5.72 8.06 -2.91 -0.02 5.70 15 23 H 0.25 8.35 8.06 -2.91 -0.02 8.33 15 24 H 0.31 11.80 8.29 -92.71 -0.77 11.03 15 25 H 0.15 6.89 6.17 -2.91 -0.02 6.88 15 Total: -1.00 -63.85 228.09 5.05 -58.80 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 1.21 Total: 20.52 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.31 Total: -4.72 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.50 Total: -109.90 kcal Atomic # 14 Polarization: 33.27 SS G_CDS: 2.03 Total: 35.30 kcal Total: -63.85 5.05 -58.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046475.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.331 kcal (2) G-P(sol) polarization free energy of solvation -63.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds