Wall clock time and date at job start Mon Mar 30 2020 02:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30942 * 1 3 3 Si 1.86807 * 119.99962 * 2 1 4 4 H 1.48504 * 109.46896 * 239.99857 * 3 2 1 5 5 H 1.48496 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46983 * 120.00225 * 3 2 1 7 7 C 1.39755 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99907 * 179.97438 * 7 2 1 9 9 C 1.41469 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.41805 * 126.40571 * 179.97438 * 9 7 2 11 11 C 1.36685 * 105.45491 * 179.73739 * 10 9 7 12 12 C 1.47347 * 126.52202 * 179.97438 * 11 10 9 13 13 C 1.36496 * 126.08432 * 179.69118 * 12 11 10 14 14 C 1.40334 * 107.32204 * 179.85176 * 13 12 11 15 15 C 1.35128 * 107.73190 * 0.41435 * 14 13 12 16 16 N 1.36306 * 108.53100 * 359.74637 * 15 14 13 17 17 H 0.97000 * 125.70468 * 179.97438 * 16 15 14 18 18 N 1.36936 * 106.95984 * 0.02562 * 11 10 9 19 19 H 0.96998 * 124.95936 * 180.02562 * 18 11 10 20 20 N 1.28450 * 110.08038 * 359.97438 * 18 11 10 21 21 H 0.97008 * 119.99951 * 0.02562 * 1 2 3 22 22 H 1.07998 * 127.27154 * 359.73436 * 10 9 7 23 23 H 1.07995 * 126.33740 * 359.97438 * 13 12 11 24 24 H 1.07997 * 126.13343 * 180.12635 * 14 13 12 25 25 H 1.08000 * 125.73483 * 179.72150 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2434 1.6178 0.0000 4 1 3.0972 1.6964 -1.2125 5 1 1.2784 2.7465 -0.0006 6 1 3.0972 1.6964 1.2124 7 6 2.0082 -1.2103 0.0005 8 1 3.0881 -1.2103 0.0001 9 6 1.3008 -2.4355 0.0005 10 6 1.8684 -3.7350 0.0005 11 6 0.8069 -4.5961 0.0066 12 6 0.8719 -6.0681 0.0085 13 6 -0.1947 -6.9199 0.0205 14 6 0.3148 -8.2274 0.0142 15 6 1.6634 -8.1436 0.0081 16 7 2.0157 -6.8269 0.0045 17 1 2.9229 -6.4835 0.0003 18 7 -0.3285 -3.8305 0.0094 19 1 -1.2337 -4.1789 0.0140 20 7 -0.0197 -2.5837 0.0060 21 1 -0.4850 0.8401 -0.0004 22 1 2.9177 -3.9904 -0.0034 23 1 -1.2375 -6.6394 0.0307 24 1 -0.2667 -9.1375 0.0187 25 1 2.3474 -8.9795 0.0067 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074310173.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:36 Heat of formation + Delta-G solvation = 85.134299 kcal Electronic energy + Delta-G solvation = -12065.169738 eV Core-core repulsion = 9851.679995 eV Total energy + Delta-G solvation = -2213.489744 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.44946 -41.39690 -35.36235 -32.33185 -32.07314 -31.55859 -28.33539 -27.48667 -22.93934 -22.07067 -21.14777 -20.83836 -19.58839 -18.29480 -16.87379 -16.34833 -15.72050 -14.89202 -14.69620 -14.67806 -14.33843 -13.99298 -13.27333 -13.06958 -12.85407 -12.56027 -12.48011 -11.77262 -11.22866 -10.50704 -10.15957 -9.78089 -9.63866 -8.35538 -8.29950 -6.27374 0.74494 1.43836 1.44231 1.56475 1.94697 2.24206 2.32914 2.34909 2.50312 2.99274 3.60565 4.00756 4.45949 4.54338 4.59570 4.67333 5.09035 5.24424 5.35378 5.41181 5.48350 5.80316 6.08866 6.18119 6.36445 6.76051 6.89843 6.94921 7.22869 8.25501 8.70134 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.092238 B = 0.007425 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.490933 B = 3770.390150 C = 4064.033096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.021 3.979 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.156 3.844 10 C -0.308 4.308 11 C 0.066 3.934 12 C 0.064 3.936 13 C -0.203 4.203 14 C -0.215 4.215 15 C 0.005 3.995 16 N -0.544 5.544 17 H 0.424 0.576 18 N -0.420 5.420 19 H 0.433 0.567 20 N -0.355 5.355 21 H 0.272 0.728 22 H 0.140 0.860 23 H 0.136 0.864 24 H 0.160 0.840 25 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.194 -12.111 0.022 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.007 3.993 10 C -0.339 4.339 11 C -0.063 4.063 12 C -0.050 4.050 13 C -0.230 4.230 14 C -0.239 4.239 15 C -0.127 4.127 16 N -0.140 5.140 17 H 0.262 0.738 18 N -0.129 5.129 19 H 0.275 0.725 20 N -0.189 5.189 21 H 0.082 0.918 22 H 0.158 0.842 23 H 0.154 0.846 24 H 0.178 0.822 25 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.129 -11.321 0.024 11.519 hybrid contribution 0.788 0.455 -0.004 0.910 sum 2.917 -10.865 0.020 11.250 Atomic orbital electron populations 1.70110 1.08602 1.28587 1.38096 1.26722 0.95685 1.04161 0.92672 0.85200 0.78309 0.75915 0.79754 1.18522 1.20031 1.18516 1.18912 0.93938 0.89253 1.50620 0.89831 1.19645 0.88679 0.93884 0.97051 1.21738 0.97961 0.92694 1.21535 1.19063 0.88451 0.89457 1.09329 1.17728 0.87927 0.87088 1.12300 1.21136 0.97463 0.93628 1.10756 1.21092 0.94347 0.97063 1.11394 1.22591 0.97243 0.85283 1.07598 1.42030 1.07851 1.06369 1.57707 0.73796 1.43651 1.07372 1.03558 1.58349 0.72462 1.74600 1.17085 0.95632 1.31593 0.91791 0.84232 0.84643 0.82224 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.89 11.96 21.80 0.26 -48.63 15 2 C 0.02 1.20 5.49 85.19 0.47 1.67 15 3 Si 0.99 41.93 29.56 68.60 2.03 43.96 15 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 7 C -0.49 -28.65 9.41 23.43 0.22 -28.43 15 8 H 0.08 4.57 7.84 -2.91 -0.02 4.54 15 9 C 0.16 9.16 6.76 40.66 0.28 9.44 15 10 C -0.31 -15.34 10.93 22.79 0.25 -15.09 15 11 C 0.07 2.94 7.09 40.38 0.29 3.23 15 12 C 0.06 2.26 7.03 40.29 0.28 2.54 15 13 C -0.20 -6.32 10.80 22.37 0.24 -6.08 15 14 C -0.21 -5.26 10.83 22.06 0.24 -5.02 15 15 C 0.01 0.12 11.92 83.28 0.99 1.11 15 16 N -0.54 -14.89 6.11 -183.96 -1.12 -16.01 15 17 H 0.42 9.92 8.96 -92.71 -0.83 9.09 15 18 N -0.42 -20.14 6.91 -48.68 -0.34 -20.48 15 19 H 0.43 17.39 8.96 -220.00 -1.97 15.42 15 20 N -0.36 -20.71 10.46 -51.80 -0.54 -21.25 15 21 H 0.27 14.84 8.30 -92.70 -0.77 14.07 15 22 H 0.14 6.08 8.06 -2.91 -0.02 6.06 15 23 H 0.14 3.90 8.06 -2.91 -0.02 3.87 15 24 H 0.16 2.96 8.06 -2.91 -0.02 2.94 15 25 H 0.21 2.49 8.06 -2.91 -0.02 2.47 15 Total: -1.00 -72.90 232.89 1.97 -70.92 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -1.57 Total: 28.13 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 3.26 Total: -36.64 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -1.74 Total: -106.37 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -72.90 1.97 -70.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074310173.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.059 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds