Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.34268 * 126.58163 * 264.68398 * 10 9 7 12 12 N 1.37046 * 109.92015 * 179.83562 * 11 10 9 13 13 H 0.96999 * 124.97039 * 180.18063 * 12 11 10 14 14 C 1.36799 * 110.05351 * 0.44746 * 12 11 10 15 15 N 1.32904 * 134.41626 * 179.76382 * 14 12 11 16 16 C 1.31564 * 120.52591 * 180.02562 * 15 14 12 17 17 N 1.32128 * 122.63105 * 359.95224 * 16 15 14 18 18 C 1.32280 * 121.17766 * 0.02583 * 17 16 15 19 19 C 1.39377 * 118.46780 * 359.97438 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08002 * 125.04486 * 359.97047 * 11 10 9 24 24 H 1.07999 * 118.67949 * 179.97438 * 16 15 14 25 25 H 1.08000 * 120.76644 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6744 -4.3130 -1.0869 12 7 3.5580 -5.2866 -0.7002 13 1 4.0123 -5.8961 -1.3027 14 6 3.7009 -5.2769 0.6602 15 7 4.4105 -5.9932 1.5261 16 6 4.3399 -5.7439 2.8160 17 7 3.5774 -4.7877 3.3161 18 6 2.8358 -4.0227 2.5321 19 6 2.8745 -4.2457 1.1569 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.3807 -4.1117 -2.1065 24 1 4.9290 -6.3446 3.4930 25 1 2.2152 -3.2428 2.9480 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074310179.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = 72.842535 kcal Electronic energy + Delta-G solvation = -12193.874066 eV Core-core repulsion = 9979.851311 eV Total energy + Delta-G solvation = -2214.022755 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.35554 -38.17004 -33.85469 -32.80130 -31.05283 -29.64659 -26.93183 -23.95882 -23.18428 -22.70364 -18.98773 -18.16164 -16.80358 -16.32004 -15.64314 -14.90188 -14.53750 -14.27573 -13.01684 -12.83273 -12.69098 -12.39122 -12.03014 -11.41082 -10.90439 -10.69232 -10.37410 -10.17230 -9.75638 -9.42521 -8.76715 -8.54453 -8.44026 -7.39547 -6.05967 -4.10100 1.27373 1.76509 3.09188 3.23853 3.29214 3.36471 3.41891 4.35192 4.44803 4.63101 4.80411 5.12951 5.26405 5.33230 5.69185 5.91188 6.10265 6.37774 6.79783 6.98988 7.25829 7.33720 7.53639 7.67215 7.89089 7.89790 8.30597 8.60641 8.94930 9.54325 11.03162 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.043407 B = 0.009353 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.904553 B = 2993.078409 C = 3262.777962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.077 3.923 10 C -0.079 4.079 11 C 0.013 3.987 12 N -0.576 5.576 13 H 0.414 0.586 14 C 0.307 3.693 15 N -0.543 5.543 16 C 0.297 3.703 17 N -0.552 5.552 18 C 0.213 3.787 19 C -0.199 4.199 20 H 0.262 0.738 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.177 0.823 24 H 0.191 0.809 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.090 -8.543 -0.018 9.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.040 3.960 10 C -0.086 4.086 11 C -0.108 4.108 12 N -0.184 5.184 13 H 0.251 0.749 14 C 0.065 3.935 15 N -0.264 5.264 16 C 0.008 3.992 17 N -0.269 5.269 18 C 0.043 3.957 19 C -0.209 4.209 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.194 0.806 24 H 0.207 0.793 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.532 -9.061 0.422 10.624 hybrid contribution 0.297 1.125 -0.962 1.510 sum 5.829 -7.935 -0.540 9.861 Atomic orbital electron populations 1.69947 1.05983 1.26856 1.50490 1.24985 0.94842 0.99159 0.95188 0.86570 0.79902 0.83309 0.78135 1.20659 1.21123 1.19868 1.21068 0.93027 0.89925 1.51004 0.92635 1.17802 0.91640 0.88152 0.98426 1.21221 1.00555 0.98209 0.88660 1.21774 0.96454 0.92586 1.00024 1.41418 1.40697 1.32637 1.03625 0.74923 1.18456 0.95158 0.94053 0.85822 1.67227 1.25132 1.30404 1.03625 1.24430 0.94138 0.92917 0.87762 1.68433 1.10207 1.08138 1.40084 1.22814 0.91230 0.93552 0.88093 1.20751 1.03420 1.00532 0.96201 0.92808 0.95042 0.95040 0.80580 0.79284 0.81189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.29 55.43 0.74 -24.79 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.51 -13.78 9.09 -34.44 -0.31 -14.10 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.08 1.88 5.51 -29.03 -0.16 1.72 15 10 C -0.08 -1.64 5.51 -102.80 -0.57 -2.21 15 11 C 0.01 0.23 11.74 -16.62 -0.20 0.03 15 12 N -0.58 -9.03 6.03 -12.10 -0.07 -9.10 15 13 H 0.41 4.94 8.96 -40.82 -0.37 4.57 15 14 C 0.31 5.68 8.49 -155.92 -1.32 4.35 15 15 N -0.54 -9.54 10.47 -13.82 -0.14 -9.68 15 16 C 0.30 4.81 12.24 -92.06 -1.13 3.69 15 17 N -0.55 -9.85 10.43 -14.37 -0.15 -10.00 15 18 C 0.21 4.06 11.38 -16.93 -0.19 3.87 15 19 C -0.20 -4.00 6.41 -105.14 -0.67 -4.67 15 20 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 21 H 0.03 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.18 2.49 8.06 -52.49 -0.42 2.07 15 24 H 0.19 2.25 8.06 -52.49 -0.42 1.83 15 25 H 0.17 3.06 8.06 -52.49 -0.42 2.64 15 LS Contribution 232.36 15.07 3.50 3.50 Total: -1.00 -30.69 232.36 -7.82 -38.51 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -2.02 Total: 1.28 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -4.65 Total: -5.78 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.37 Total: -53.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -30.69 -7.82 -38.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074310179.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.350 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds