Wall clock time and date at job start Mon Mar 30 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.36120 * 126.27785 * 264.68734 * 10 9 7 12 12 N 1.30110 * 110.08364 * 179.87941 * 11 10 9 13 13 C 1.35668 * 109.49808 * 0.38818 * 12 11 10 14 14 C 1.39834 * 133.87649 * 179.79789 * 13 12 11 15 15 C 1.38166 * 118.16076 * 179.97438 * 14 13 12 16 16 C 1.38617 * 119.55557 * 0.02562 * 15 14 13 17 17 N 1.31688 * 121.35947 * 359.97438 * 16 15 14 18 18 C 1.32350 * 121.57471 * 359.97438 * 17 16 15 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.07996 * 124.95425 * 0.03633 * 11 10 9 23 23 H 1.08001 * 120.92023 * 359.94387 * 14 13 12 24 24 H 1.07999 * 120.22151 * 180.02562 * 15 14 13 25 25 H 1.07998 * 119.32119 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6491 -4.2909 -1.0921 12 7 3.4885 -5.2171 -0.7310 13 6 3.6294 -5.1995 0.6182 14 6 4.3802 -5.9551 1.5242 15 6 4.2774 -5.6522 2.8683 16 6 3.4438 -4.6223 3.2754 17 7 2.7448 -3.9222 2.4062 18 6 2.8066 -4.1694 1.1075 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.3517 -4.0880 -2.1103 23 1 5.0223 -6.7536 1.1827 24 1 4.8428 -6.2143 3.5969 25 1 3.3667 -4.3885 4.3269 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075935139.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:14 Heat of formation + Delta-G solvation = 61.529054 kcal Electronic energy + Delta-G solvation = -12292.352520 eV Core-core repulsion = 10077.839176 eV Total energy + Delta-G solvation = -2214.513344 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.10607 -39.16647 -36.05797 -34.39346 -32.54945 -30.50781 -29.25235 -25.46984 -24.82618 -23.53981 -21.54843 -18.97334 -18.60941 -18.12930 -17.02748 -16.59779 -16.33311 -15.39663 -14.77988 -14.55577 -14.08559 -13.74141 -13.53569 -13.33903 -13.09863 -12.76423 -12.41660 -12.15188 -11.71063 -11.34715 -10.77609 -10.02082 -9.53406 -9.39723 -8.38485 -6.54627 0.00191 0.45885 1.34107 1.35495 1.47501 1.76441 1.93928 2.31387 2.93520 2.98057 3.25792 3.59586 3.88091 4.13773 4.26599 4.37948 4.66892 4.75072 4.89143 5.21004 5.23619 5.49023 5.55388 5.76859 5.83017 6.14663 6.53431 6.82474 7.10567 7.18425 8.69705 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.043918 B = 0.009735 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.404660 B = 2875.509603 C = 3140.311371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.554 4.554 8 H 0.046 0.954 9 C 0.257 3.743 10 N -0.468 5.468 11 C 0.267 3.733 12 N -0.521 5.521 13 C -0.031 4.031 14 C -0.034 4.034 15 C -0.171 4.171 16 C 0.120 3.880 17 N -0.518 5.518 18 C 0.203 3.797 19 H 0.274 0.726 20 H 0.020 0.980 21 H 0.054 0.946 22 H 0.247 0.753 23 H 0.164 0.836 24 H 0.190 0.810 25 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -8.402 3.325 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.190 1.190 6 H -0.199 1.199 7 C -0.592 4.592 8 H 0.064 0.936 9 C 0.138 3.862 10 N -0.156 5.156 11 C -0.019 4.019 12 N -0.242 5.242 13 C -0.153 4.153 14 C -0.062 4.062 15 C -0.193 4.193 16 C -0.049 4.049 17 N -0.231 5.231 18 C -0.032 4.032 19 H 0.083 0.917 20 H 0.038 0.962 21 H 0.072 0.928 22 H 0.263 0.737 23 H 0.182 0.818 24 H 0.207 0.793 25 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.226 -8.012 2.974 10.574 hybrid contribution 0.009 1.046 0.084 1.050 sum 6.235 -6.966 3.058 9.836 Atomic orbital electron populations 1.70004 1.07298 1.28827 1.49400 1.25728 0.95807 1.02733 0.93541 0.85301 0.78276 0.78342 0.78493 1.20013 1.19030 1.19934 1.21403 0.92882 0.91221 1.53682 0.93581 1.19320 0.86775 0.81819 0.98319 1.45919 1.36293 1.28274 1.05140 1.25974 0.92730 0.88699 0.94499 1.70418 1.20094 1.23097 1.10585 1.20288 1.02711 0.99998 0.92287 1.21113 0.95911 0.97565 0.91570 1.22299 1.01407 0.99753 0.95877 1.23311 0.91207 0.91184 0.99158 1.66366 1.25563 1.30484 1.00672 1.19464 0.98612 0.96299 0.88849 0.91716 0.96209 0.92842 0.73750 0.81799 0.79277 0.79004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.20 13.29 21.45 0.28 -51.92 15 2 C 0.02 1.27 5.46 84.66 0.46 1.73 15 3 Si 0.97 43.49 29.54 68.60 2.03 45.52 15 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 7 C -0.55 -31.22 9.39 25.60 0.24 -30.98 15 8 H 0.05 2.70 7.81 -2.91 -0.02 2.67 15 9 C 0.26 13.47 5.92 85.63 0.51 13.98 15 10 N -0.47 -21.94 2.78 -530.09 -1.47 -23.41 15 11 C 0.27 10.55 12.49 180.03 2.25 12.80 15 12 N -0.52 -20.94 11.28 -191.88 -2.16 -23.11 15 13 C -0.03 -1.23 7.24 39.52 0.29 -0.95 15 14 C -0.03 -1.01 10.22 22.64 0.23 -0.78 15 15 C -0.17 -4.17 10.09 22.34 0.23 -3.94 15 16 C 0.12 3.66 11.16 84.80 0.95 4.60 15 17 N -0.52 -22.53 10.38 -192.74 -2.00 -24.53 15 18 C 0.20 9.30 8.01 133.84 1.07 10.37 15 19 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 20 H 0.02 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.05 2.72 8.13 -2.39 -0.02 2.70 15 22 H 0.25 7.38 8.06 -2.91 -0.02 7.35 15 23 H 0.16 3.72 8.06 -2.91 -0.02 3.69 15 24 H 0.19 2.53 8.06 -2.91 -0.02 2.50 15 25 H 0.19 4.19 8.06 -2.91 -0.02 4.16 15 Total: -1.00 -70.17 233.19 4.09 -66.08 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.19 Total: 4.53 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.22 Total: 6.84 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.36 Total: -122.97 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.17 4.09 -66.08 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935139.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.610 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds