Wall clock time and date at job start Mon Mar 30 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86807 * 120.00077 * 2 1 4 4 H 1.48496 * 109.46773 * 274.98084 * 3 2 1 5 5 H 1.48501 * 109.46827 * 34.97731 * 3 2 1 6 6 H 1.48496 * 109.47020 * 154.98125 * 3 2 1 7 7 C 1.40290 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00209 * 186.05310 * 7 2 1 9 9 C 1.39966 * 119.99729 * 6.06202 * 7 2 1 10 10 N 1.32557 * 125.30990 * 354.17575 * 9 7 2 11 11 C 1.33848 * 109.84348 * 180.02562 * 10 9 7 12 12 C 1.40737 * 133.04961 * 179.97438 * 11 10 9 13 13 C 1.36108 * 119.95250 * 180.02562 * 12 11 10 14 14 C 1.39905 * 120.65963 * 359.96909 * 13 12 11 15 15 N 1.39103 * 119.81452 * 179.97438 * 14 13 12 16 16 C 1.38875 * 120.37886 * 0.03420 * 14 13 12 17 17 C 1.38365 * 119.71745 * 359.97438 * 16 14 13 18 18 N 1.37982 * 125.30500 * 174.20105 * 9 7 2 19 19 H 0.96995 * 126.56787 * 359.96077 * 18 9 7 20 20 H 0.96998 * 120.00426 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.02440 * 0.04620 * 12 11 10 22 22 H 1.08000 * 119.67450 * 180.02562 * 13 12 11 23 23 H 0.97001 * 119.99869 * 0.02562 * 15 14 13 24 24 H 0.96995 * 120.00648 * 180.02562 * 15 14 13 25 25 H 1.08000 * 120.14588 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.3825 2.1072 -1.3948 5 1 1.4943 2.6200 0.8026 6 1 3.5865 1.4121 0.5921 7 6 2.0077 -1.2149 0.0005 8 1 3.0832 -1.2175 0.0992 9 6 1.3138 -2.4237 -0.1269 10 7 -0.0055 -2.5516 -0.1446 11 6 -0.3351 -3.8419 -0.2787 12 6 -1.5685 -4.5158 -0.3519 13 6 -1.5961 -5.8694 -0.4911 14 6 -0.4073 -6.6036 -0.5635 15 7 -0.4560 -7.9865 -0.7052 16 6 0.8211 -5.9596 -0.4933 17 6 0.8674 -4.5840 -0.3516 18 7 1.8963 -3.6682 -0.2533 19 1 2.8464 -3.8624 -0.2703 20 1 -0.4851 0.8400 -0.0004 21 1 -2.4925 -3.9592 -0.2980 22 1 -2.5451 -6.3820 -0.5473 23 1 -1.3125 -8.4392 -0.7540 24 1 0.3665 -8.4982 -0.7553 25 1 1.7365 -6.5301 -0.5491 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973519.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:44 Heat of formation + Delta-G solvation = 58.772520 kcal Electronic energy + Delta-G solvation = -12216.497560 eV Core-core repulsion = 10001.864683 eV Total energy + Delta-G solvation = -2214.632876 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.12485 -36.80323 -33.61884 -32.59627 -30.97295 -28.90062 -27.56330 -25.02432 -21.56433 -20.58788 -19.98575 -17.59861 -16.41310 -16.11184 -15.68263 -14.71409 -14.13117 -13.53890 -13.07085 -12.75410 -12.54453 -11.81962 -11.67523 -11.37006 -11.21846 -10.62145 -10.35183 -10.27686 -9.49770 -9.41915 -8.42118 -7.81246 -7.19866 -6.56661 -6.35346 -4.41788 2.34616 2.81336 3.06293 3.08923 3.12074 3.90251 4.25751 4.39511 4.79366 5.05746 5.62611 5.73450 5.89498 6.39664 6.53854 6.56931 6.75387 7.05489 7.13982 7.39641 7.53572 7.55367 7.91445 8.07739 8.23398 8.43873 8.46141 8.77627 9.24486 10.08726 10.33863 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.085828 B = 0.008393 C = 0.007672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.156500 B = 3335.156977 C = 3648.583063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.079 3.921 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.411 3.589 10 N -0.532 5.532 11 C 0.064 3.936 12 C -0.083 4.083 13 C -0.187 4.187 14 C 0.158 3.842 15 N -0.890 5.890 16 C -0.187 4.187 17 C 0.037 3.963 18 N -0.652 5.652 19 H 0.400 0.600 20 H 0.277 0.723 21 H 0.110 0.890 22 H 0.104 0.896 23 H 0.388 0.612 24 H 0.386 0.614 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -6.337 -0.789 6.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.103 0.897 9 C 0.171 3.829 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.105 4.105 13 C -0.211 4.211 14 C 0.056 3.944 15 N -0.432 5.432 16 C -0.214 4.214 17 C -0.074 4.074 18 N -0.267 5.267 19 H 0.235 0.765 20 H 0.088 0.912 21 H 0.129 0.871 22 H 0.122 0.878 23 H 0.215 0.785 24 H 0.212 0.788 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.610 -5.429 -0.700 5.508 hybrid contribution 1.492 -0.490 -0.136 1.576 sum 2.102 -5.919 -0.836 6.337 Atomic orbital electron populations 1.70005 1.07129 1.28269 1.29049 1.25798 0.94850 1.00599 0.93547 0.86168 0.80162 0.80544 0.79012 1.19488 1.20034 1.18666 1.18359 0.94369 0.87749 1.48406 0.89714 1.20363 0.87402 0.83597 0.91577 1.71277 1.09416 1.12990 1.32035 1.19501 0.91855 0.91700 1.03115 1.19596 0.95217 0.92584 1.03095 1.19777 0.95223 0.93775 1.12336 1.17021 0.92839 0.83343 1.01210 1.41934 1.09205 1.04244 1.87807 1.18852 0.95263 0.90920 1.16381 1.18587 0.90380 0.90946 1.07510 1.43504 1.06783 1.07249 1.69167 0.76485 0.91208 0.87146 0.87759 0.78546 0.78770 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.65 11.87 55.57 0.66 -18.99 15 2 C 0.08 2.00 5.49 -17.29 -0.09 1.90 15 3 Si 0.92 18.39 29.57 -169.99 -5.03 13.36 15 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 7 C -0.45 -11.85 9.45 -38.16 -0.36 -12.21 15 8 H 0.08 2.02 7.86 -52.49 -0.41 1.60 15 9 C 0.41 11.36 7.56 -155.56 -1.18 10.18 15 10 N -0.53 -15.64 9.34 -10.25 -0.10 -15.73 15 11 C 0.06 1.71 7.21 -84.80 -0.61 1.10 15 12 C -0.08 -1.92 10.06 -39.40 -0.40 -2.32 15 13 C -0.19 -3.71 9.80 -39.72 -0.39 -4.10 15 14 C 0.16 3.01 6.76 -83.70 -0.57 2.44 15 15 N -0.89 -12.57 9.06 32.49 0.29 -12.27 15 16 C -0.19 -3.89 9.90 -39.30 -0.39 -4.28 15 17 C 0.04 0.90 7.29 -83.75 -0.61 0.29 15 18 N -0.65 -15.64 6.34 -9.90 -0.06 -15.70 15 19 H 0.40 8.04 8.96 -40.82 -0.37 7.67 15 20 H 0.28 6.78 8.29 -40.82 -0.34 6.45 15 21 H 0.11 2.42 8.06 -52.48 -0.42 1.99 15 22 H 0.10 1.73 8.06 -52.49 -0.42 1.31 15 23 H 0.39 4.56 8.83 -40.82 -0.36 4.20 15 24 H 0.39 4.67 8.83 -40.82 -0.36 4.31 15 25 H 0.10 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 227.96 15.07 3.44 3.44 Total: -1.00 -31.41 227.96 -7.29 -38.70 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -1.90 Total: 14.20 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -4.59 Total: -6.99 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.80 Total: -62.70 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.41 -7.29 -38.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973519.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.471 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds