Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00218 * 2 1 4 4 H 1.48501 * 109.47301 * 91.70672 * 3 2 1 5 5 H 1.48504 * 109.47117 * 211.70687 * 3 2 1 6 6 H 1.48500 * 109.47314 * 331.70348 * 3 2 1 7 7 C 1.37880 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00082 * 355.64252 * 7 2 1 9 9 C 1.50701 * 120.00216 * 175.64391 * 7 2 1 10 10 N 1.46902 * 110.26709 * 52.86966 * 9 7 2 11 11 C 1.54342 * 110.30038 * 290.69018 * 9 7 2 12 12 C 1.54342 * 102.39435 * 267.42367 * 11 9 7 13 13 C 1.51375 * 105.16668 * 333.65390 * 12 11 9 14 14 C 1.38500 * 130.38663 * 197.18602 * 13 12 11 15 15 C 1.38110 * 120.21234 * 179.97438 * 14 13 12 16 16 C 1.38247 * 119.93308 * 0.02701 * 15 14 13 17 17 C 1.38106 * 119.93753 * 359.97438 * 16 15 14 18 18 C 1.38211 * 109.75801 * 17.18985 * 13 12 11 19 19 H 0.97007 * 119.99798 * 359.97438 * 1 2 3 20 20 H 1.00896 * 110.99998 * 54.44675 * 10 9 7 21 21 H 1.00894 * 110.99826 * 178.40405 * 10 9 7 22 22 H 1.09004 * 110.82363 * 25.65311 * 11 9 7 23 23 H 1.09006 * 110.82153 * 149.19286 * 11 9 7 24 24 H 1.09007 * 110.30080 * 214.73452 * 12 11 9 25 25 H 1.08996 * 110.38668 * 92.62170 * 12 11 9 26 26 H 1.07997 * 119.89475 * 359.97438 * 14 13 12 27 27 H 1.07991 * 120.02816 * 180.02562 * 15 14 13 28 28 H 1.07999 * 120.03365 * 179.97438 * 16 15 14 29 29 H 1.08006 * 119.89361 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.5328 2.0255 1.3994 5 1 3.5282 1.4507 -0.7359 6 1 1.4291 2.6628 -0.6637 7 6 2.0045 -1.1941 0.0005 8 1 1.4668 -2.1281 0.0720 9 6 3.5082 -1.1961 -0.0986 10 7 4.0873 -0.3234 0.9315 11 6 3.9529 -0.7378 -1.5037 12 6 4.0798 -2.0752 -2.2636 13 6 4.3707 -3.1102 -1.1980 14 6 4.8822 -4.3925 -1.3082 15 6 5.0655 -5.1671 -0.1796 16 6 4.7370 -4.6618 1.0646 17 6 4.2267 -3.3834 1.1766 18 6 4.0422 -2.6051 0.0459 19 1 -0.4850 0.8401 0.0004 20 1 3.7581 -0.5804 1.8499 21 1 5.0954 -0.3368 0.8918 22 1 3.1950 -0.1022 -1.9619 23 1 4.9138 -0.2253 -1.4581 24 1 4.9013 -2.0274 -2.9786 25 1 3.1469 -2.3111 -2.7755 26 1 5.1387 -4.7880 -2.2799 27 1 5.4649 -6.1664 -0.2690 28 1 4.8792 -5.2663 1.9482 29 1 3.9699 -2.9895 2.1489 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084332346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = 4.160420 kcal Electronic energy + Delta-G solvation = -13071.532232 eV Core-core repulsion = 10958.071540 eV Total energy + Delta-G solvation = -2113.460691 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.07942 -37.39320 -34.42235 -33.53235 -31.11652 -29.70528 -28.16032 -25.27445 -23.53026 -21.78401 -20.97771 -18.49288 -17.45326 -16.58949 -16.18427 -15.95583 -15.67731 -15.31553 -14.71307 -14.27493 -13.96292 -13.43307 -13.07836 -12.82384 -12.68337 -12.40585 -12.08687 -11.96680 -11.62612 -11.38208 -11.18987 -10.68327 -9.63405 -9.42368 -9.14476 -8.24846 -6.38134 0.56974 0.61491 1.57820 1.60955 1.84058 2.57129 2.97246 3.09820 3.73430 3.83249 4.13681 4.25037 4.26596 4.45229 4.51783 4.64626 4.77524 4.90236 5.05091 5.15024 5.24878 5.29184 5.40785 5.58516 5.66538 5.79769 5.93321 6.08127 6.24582 6.49127 6.70800 6.96386 7.39111 8.87952 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.046496 B = 0.012377 C = 0.011860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.061784 B = 2261.749293 C = 2360.341605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.025 3.975 3 Si 1.005 2.995 4 H -0.290 1.290 5 H -0.231 1.231 6 H -0.344 1.344 7 C -0.504 4.504 8 H 0.020 0.980 9 C 0.248 3.752 10 N -0.836 5.836 11 C -0.108 4.108 12 C -0.071 4.071 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.127 4.127 18 C -0.113 4.113 19 H 0.263 0.737 20 H 0.339 0.661 21 H 0.336 0.664 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.140 0.860 27 H 0.152 0.848 28 H 0.144 0.856 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.217 -6.317 -1.232 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.174 4.174 3 Si 0.837 3.163 4 H -0.217 1.217 5 H -0.154 1.154 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.038 0.962 9 C 0.156 3.844 10 N -0.367 5.367 11 C -0.146 4.146 12 C -0.108 4.108 13 C -0.115 4.115 14 C -0.135 4.135 15 C -0.148 4.148 16 C -0.146 4.146 17 C -0.146 4.146 18 C -0.116 4.116 19 H 0.072 0.928 20 H 0.152 0.848 21 H 0.150 0.850 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.083 0.917 26 H 0.158 0.842 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.711 -5.644 -1.598 14.000 hybrid contribution -0.243 -0.077 0.659 0.706 sum 12.468 -5.721 -0.940 13.750 Atomic orbital electron populations 1.70110 1.08824 1.28142 1.51950 1.25904 0.95122 1.03820 0.92518 0.84872 0.78127 0.75199 0.78127 1.21727 1.15404 1.27645 1.20765 0.89781 0.92263 1.51396 0.96195 1.18366 0.92011 0.84124 0.89873 1.58873 1.11922 1.57320 1.08546 1.22549 1.00012 0.96355 0.95684 1.20957 1.01461 0.92229 0.96168 1.20896 0.99090 0.95841 0.95722 1.20924 1.00011 0.92578 1.00024 1.21323 1.00941 1.00609 0.91879 1.21295 0.99584 0.94769 0.98935 1.20780 1.00873 0.95211 0.97701 1.21701 0.96622 0.98905 0.94323 0.92849 0.84822 0.84976 0.92652 0.91096 0.88895 0.91674 0.84242 0.82987 0.83812 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 15 2 C 0.02 1.46 5.34 84.66 0.45 1.91 15 3 Si 1.00 49.58 24.32 68.60 1.67 51.25 15 4 H -0.29 -14.19 7.11 99.48 0.71 -13.49 15 5 H -0.23 -10.26 5.22 99.48 0.52 -9.74 15 6 H -0.34 -17.59 7.11 99.48 0.71 -16.88 15 7 C -0.50 -28.75 8.71 25.60 0.22 -28.53 15 8 H 0.02 1.30 8.01 -2.91 -0.02 1.28 15 9 C 0.25 11.11 0.60 2.70 0.00 11.11 15 10 N -0.84 -33.61 5.49 -154.84 -0.85 -34.46 15 11 C -0.11 -4.39 4.47 31.50 0.14 -4.25 15 12 C -0.07 -2.55 6.76 30.52 0.21 -2.34 15 13 C -0.11 -4.22 6.14 -19.59 -0.12 -4.34 15 14 C -0.12 -3.52 10.04 22.30 0.22 -3.29 15 15 C -0.13 -3.48 10.05 22.24 0.22 -3.26 15 16 C -0.13 -3.75 10.05 22.24 0.22 -3.53 15 17 C -0.13 -4.60 10.00 22.30 0.22 -4.38 15 18 C -0.11 -4.61 5.00 -19.60 -0.10 -4.70 15 19 H 0.26 15.92 8.31 -92.70 -0.77 15.15 15 20 H 0.34 13.52 8.98 -89.70 -0.81 12.71 15 21 H 0.34 11.37 8.93 -89.70 -0.80 10.57 15 22 H 0.05 2.47 6.05 -2.38 -0.01 2.46 15 23 H 0.07 2.57 8.04 -2.38 -0.02 2.55 15 24 H 0.09 2.65 8.14 -2.38 -0.02 2.63 15 25 H 0.06 2.49 8.14 -2.39 -0.02 2.48 15 26 H 0.14 3.30 8.06 -2.91 -0.02 3.28 15 27 H 0.15 2.91 8.06 -2.91 -0.02 2.88 15 28 H 0.14 3.26 8.06 -2.91 -0.02 3.24 15 29 H 0.11 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -68.51 237.18 2.18 -66.33 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.63 Total: 22.98 kcal Atomic # 6 Polarization: -47.31 SS G_CDS: 1.70 Total: -45.61 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -0.55 Total: -94.95 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.67 Total: 51.25 kcal Total: -68.51 2.18 -66.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.490 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds