Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 11 11 C 1.50703 * 109.46995 * 180.02562 * 9 7 2 12 12 C 1.38651 * 120.78863 * 299.71348 * 11 9 7 13 13 C 1.38199 * 119.16412 * 179.80438 * 12 11 9 14 14 N 1.31873 * 120.76393 * 0.48321 * 13 12 11 15 15 C 1.31873 * 121.72408 * 359.74669 * 14 13 12 16 16 C 1.38200 * 120.76384 * 0.02562 * 15 14 13 17 17 C 1.52999 * 109.47500 * 59.99754 * 9 7 2 18 18 C 1.53007 * 117.49730 * 248.62427 * 17 9 7 19 19 C 1.52994 * 117.49913 * 180.02562 * 17 9 7 20 20 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 21 21 H 1.08006 * 120.41804 * 0.02562 * 12 11 9 22 22 H 1.07998 * 119.62233 * 180.20729 * 13 12 11 23 23 H 1.07996 * 119.61672 * 180.02562 * 15 14 13 24 24 H 1.08005 * 120.42019 * 179.97438 * 16 15 14 25 25 H 1.08993 * 115.54776 * 34.32905 * 17 9 7 26 26 H 1.08997 * 117.49948 * 359.97438 * 18 17 9 27 27 H 1.08994 * 117.49955 * 145.01811 * 18 17 9 28 28 H 1.09005 * 117.50172 * 214.97255 * 19 17 9 29 29 H 1.09000 * 117.50350 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 2.2304 -3.6446 0.0018 12 6 3.1411 -3.8008 -1.0319 13 6 4.0267 -4.8611 -0.9947 14 7 4.0056 -5.7229 0.0032 15 6 3.1505 -5.6082 1.0006 16 6 2.2381 -4.5707 1.0336 17 6 0.3718 -2.5805 -1.2490 18 6 -1.1441 -2.5157 -1.0515 19 6 -0.4785 -3.8388 -1.4337 20 1 -0.4850 -0.8401 -0.0004 21 1 3.1606 -3.1007 -1.8541 22 1 4.7415 -4.9879 -1.7943 23 1 3.1633 -6.3333 1.8007 24 1 1.5400 -4.4822 1.8530 25 1 0.7834 -2.1150 -2.1444 26 1 -1.5149 -2.4156 -0.0315 27 1 -1.7300 -2.0075 -1.8172 28 1 -0.6267 -4.2014 -2.4509 29 1 -0.4114 -4.6090 -0.6653 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084332348.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = 46.140824 kcal Electronic energy + Delta-G solvation = -12786.061908 eV Core-core repulsion = 10674.421624 eV Total energy + Delta-G solvation = -2111.640284 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.59770 -37.12896 -33.11756 -31.99179 -30.59123 -27.48279 -23.60502 -22.81064 -22.03263 -21.45761 -19.43103 -17.01805 -16.06623 -15.41737 -14.95227 -14.48784 -13.78512 -13.63683 -13.18956 -13.02886 -12.54965 -11.99242 -11.20505 -10.90811 -10.85217 -10.57246 -10.36817 -10.15904 -9.64209 -9.38781 -9.06578 -8.73124 -8.54871 -8.44362 -8.29142 -6.35206 -4.15868 1.73746 2.01255 3.40065 3.43196 3.59015 4.41874 4.51662 4.66889 4.94786 5.25286 5.41771 5.58019 5.65721 5.76585 5.86040 5.87145 5.96624 6.24248 6.25359 6.32904 6.48079 6.69527 6.78963 6.84847 6.92686 7.12522 7.35162 7.50056 8.06166 8.37254 8.50306 8.83980 9.58282 11.01614 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.012328 C = 0.009917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.225769 B = 2270.665310 C = 2822.826955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.027 3.973 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.598 4.598 8 H 0.052 0.948 9 C 0.090 3.910 10 H 0.028 0.972 11 C 0.019 3.981 12 C -0.158 4.158 13 C 0.083 3.917 14 N -0.509 5.509 15 C 0.086 3.914 16 C -0.186 4.186 17 C -0.107 4.107 18 C -0.167 4.167 19 C -0.209 4.209 20 H 0.285 0.715 21 H 0.131 0.869 22 H 0.145 0.855 23 H 0.144 0.856 24 H 0.124 0.876 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -6.214 -1.230 6.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.179 4.179 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.636 4.636 8 H 0.071 0.929 9 C 0.072 3.928 10 H 0.046 0.954 11 C 0.012 3.988 12 C -0.178 4.178 13 C -0.073 4.073 14 N -0.219 5.219 15 C -0.071 4.071 16 C -0.206 4.206 17 C -0.126 4.126 18 C -0.204 4.204 19 C -0.246 4.246 20 H 0.099 0.901 21 H 0.149 0.851 22 H 0.162 0.838 23 H 0.161 0.839 24 H 0.142 0.858 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.320 -5.266 -1.223 5.883 hybrid contribution -0.474 -0.878 -0.021 0.998 sum 1.845 -6.144 -1.244 6.534 Atomic orbital electron populations 1.70724 1.06877 1.32642 1.44483 1.25727 0.96555 1.02244 0.93394 0.83566 0.74766 0.75280 0.76810 1.21428 1.20981 1.21524 1.21830 0.94026 0.90244 1.57494 0.92930 1.17714 0.91228 0.91529 0.92378 0.95360 1.20727 0.93764 0.93279 0.91080 1.22004 0.96494 0.98880 1.00405 1.22595 0.97403 0.91254 0.96041 1.67555 1.23330 1.28455 1.02521 1.22507 0.91846 0.96631 0.96067 1.22065 1.01513 0.96650 1.00370 1.22644 0.91697 0.97187 1.01024 1.22765 0.96896 0.99124 1.01626 1.23018 1.08535 0.92133 1.00912 0.90099 0.85088 0.83783 0.83866 0.85840 0.88877 0.89413 0.89863 0.90327 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.91 13.38 55.43 0.74 -25.17 15 2 C 0.03 0.74 5.30 -17.82 -0.09 0.65 15 3 Si 1.07 24.43 29.90 -169.99 -5.08 19.35 15 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.60 -15.94 8.25 -34.44 -0.28 -16.22 15 8 H 0.05 1.43 7.63 -52.49 -0.40 1.03 15 9 C 0.09 2.13 1.88 -92.92 -0.18 1.96 15 10 H 0.03 0.72 7.57 -51.92 -0.39 0.33 15 11 C 0.02 0.41 4.40 -104.32 -0.46 -0.05 15 12 C -0.16 -3.08 9.01 -39.44 -0.36 -3.44 15 13 C 0.08 1.46 11.18 -17.55 -0.20 1.27 15 14 N -0.51 -9.31 10.36 -13.26 -0.14 -9.45 15 15 C 0.09 1.49 11.18 -17.55 -0.20 1.29 15 16 C -0.19 -3.50 9.76 -39.44 -0.39 -3.89 15 17 C -0.11 -2.35 3.89 -90.62 -0.35 -2.70 15 18 C -0.17 -3.43 8.14 -26.75 -0.22 -3.65 15 19 C -0.21 -3.93 9.87 -26.76 -0.26 -4.19 15 20 H 0.28 7.74 3.57 -40.82 -0.15 7.60 15 21 H 0.13 2.52 8.06 -52.48 -0.42 2.09 15 22 H 0.14 2.07 8.06 -52.49 -0.42 1.65 15 23 H 0.14 1.99 8.06 -52.49 -0.42 1.56 15 24 H 0.12 2.14 8.01 -52.48 -0.42 1.72 15 25 H 0.09 2.17 8.11 -51.93 -0.42 1.75 15 26 H 0.09 1.85 7.43 -51.93 -0.39 1.46 15 27 H 0.08 1.64 8.14 -51.93 -0.42 1.22 15 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 15 LS Contribution 248.74 15.07 3.75 3.75 Total: -1.00 -28.98 248.74 -7.21 -36.19 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.50 Total: 4.31 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -2.98 Total: -28.97 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.60 Total: -34.62 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.08 Total: 19.35 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.98 -7.21 -36.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332348.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.327 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds