Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 11 11 C 1.50703 * 109.46995 * 180.02562 * 9 7 2 12 12 C 1.38651 * 120.78863 * 299.71348 * 11 9 7 13 13 C 1.38199 * 119.16412 * 179.80438 * 12 11 9 14 14 N 1.31873 * 120.76393 * 0.48321 * 13 12 11 15 15 C 1.31873 * 121.72408 * 359.74669 * 14 13 12 16 16 C 1.38200 * 120.76384 * 0.02562 * 15 14 13 17 17 C 1.52999 * 109.47500 * 59.99754 * 9 7 2 18 18 C 1.53007 * 117.49730 * 248.62427 * 17 9 7 19 19 C 1.52994 * 117.49913 * 180.02562 * 17 9 7 20 20 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 21 21 H 1.08006 * 120.41804 * 0.02562 * 12 11 9 22 22 H 1.07998 * 119.62233 * 180.20729 * 13 12 11 23 23 H 1.07996 * 119.61672 * 180.02562 * 15 14 13 24 24 H 1.08005 * 120.42019 * 179.97438 * 16 15 14 25 25 H 1.08993 * 115.54776 * 34.32905 * 17 9 7 26 26 H 1.08997 * 117.49948 * 359.97438 * 18 17 9 27 27 H 1.08994 * 117.49955 * 145.01811 * 18 17 9 28 28 H 1.09005 * 117.50172 * 214.97255 * 19 17 9 29 29 H 1.09000 * 117.50350 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 2.2304 -3.6446 0.0018 12 6 3.1411 -3.8008 -1.0319 13 6 4.0267 -4.8611 -0.9947 14 7 4.0056 -5.7229 0.0032 15 6 3.1505 -5.6082 1.0006 16 6 2.2381 -4.5707 1.0336 17 6 0.3718 -2.5805 -1.2490 18 6 -1.1441 -2.5157 -1.0515 19 6 -0.4785 -3.8388 -1.4337 20 1 -0.4850 -0.8401 -0.0004 21 1 3.1606 -3.1007 -1.8541 22 1 4.7415 -4.9879 -1.7943 23 1 3.1633 -6.3333 1.8007 24 1 1.5400 -4.4822 1.8530 25 1 0.7834 -2.1150 -2.1444 26 1 -1.5149 -2.4156 -0.0315 27 1 -1.7300 -2.0075 -1.8172 28 1 -0.6267 -4.2014 -2.4509 29 1 -0.4114 -4.6090 -0.6653 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084332348.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = 30.672901 kcal Electronic energy + Delta-G solvation = -12786.732648 eV Core-core repulsion = 10674.421624 eV Total energy + Delta-G solvation = -2112.311024 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.08372 -38.80659 -34.92228 -33.73890 -32.01288 -29.27098 -25.53692 -24.27416 -23.60150 -23.07142 -21.15604 -18.94705 -17.59854 -16.90674 -16.42842 -16.15525 -15.61640 -15.29620 -14.70646 -14.54251 -14.22881 -13.79783 -12.88285 -12.61577 -12.47320 -12.36613 -12.06154 -11.95217 -11.42299 -11.06397 -10.73674 -10.43880 -10.24373 -10.07076 -9.96959 -8.47392 -6.29256 0.31640 0.49700 1.54195 1.61041 1.78798 2.58120 3.00550 3.02574 3.23379 3.65611 3.91322 4.01008 4.09420 4.19673 4.31291 4.34478 4.41994 4.70361 4.73119 4.80618 4.92020 5.01839 5.20707 5.22565 5.30536 5.41535 5.75451 5.90149 6.09075 6.27010 6.75576 7.09016 7.51816 8.91506 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.012328 C = 0.009917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.225769 B = 2270.665310 C = 2822.826955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.018 4.018 3 Si 1.108 2.892 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.608 4.608 8 H 0.040 0.960 9 C 0.093 3.907 10 H 0.002 0.998 11 C -0.005 4.005 12 C -0.171 4.171 13 C 0.091 3.909 14 N -0.516 5.516 15 C 0.095 3.905 16 C -0.195 4.195 17 C -0.126 4.126 18 C -0.171 4.171 19 C -0.173 4.173 20 H 0.283 0.717 21 H 0.125 0.875 22 H 0.178 0.822 23 H 0.181 0.819 24 H 0.132 0.868 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -7.448 -1.506 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.219 4.219 3 Si 0.932 3.068 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.646 4.646 8 H 0.059 0.941 9 C 0.074 3.926 10 H 0.020 0.980 11 C -0.013 4.013 12 C -0.190 4.190 13 C -0.065 4.065 14 N -0.226 5.226 15 C -0.061 4.061 16 C -0.215 4.215 17 C -0.145 4.145 18 C -0.208 4.208 19 C -0.210 4.210 20 H 0.097 0.903 21 H 0.143 0.857 22 H 0.195 0.805 23 H 0.198 0.802 24 H 0.150 0.850 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.153 -6.520 -1.503 7.397 hybrid contribution -0.710 -0.567 0.088 0.913 sum 2.443 -7.088 -1.414 7.629 Atomic orbital electron populations 1.70788 1.07638 1.32866 1.46414 1.26917 0.96763 1.05404 0.92850 0.83027 0.74098 0.72176 0.77534 1.20054 1.21049 1.20431 1.22111 0.93673 0.91995 1.56777 0.94122 1.17518 0.91532 0.91640 0.91891 0.98016 1.20644 0.94297 0.93502 0.92891 1.22025 0.97104 0.99818 1.00102 1.23047 0.96942 0.89949 0.96521 1.67693 1.23525 1.28501 1.02860 1.23047 0.90340 0.96338 0.96415 1.22221 1.02377 0.96837 1.00056 1.22351 0.92204 1.00276 0.99654 1.22739 0.95944 1.00869 1.01294 1.23030 1.04703 0.90902 1.02405 0.90282 0.85661 0.80475 0.80162 0.85004 0.90652 0.90538 0.89249 0.87839 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.44 13.38 21.45 0.29 -54.15 15 2 C -0.02 -0.99 5.30 84.65 0.45 -0.54 15 3 Si 1.11 49.50 29.90 68.60 2.05 51.55 15 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 7 C -0.61 -33.06 8.25 25.60 0.21 -32.85 15 8 H 0.04 2.25 7.63 -2.91 -0.02 2.22 15 9 C 0.09 4.48 1.88 -12.29 -0.02 4.45 15 10 H 0.00 0.10 7.57 -2.38 -0.02 0.08 15 11 C -0.01 -0.23 4.40 -19.67 -0.09 -0.31 15 12 C -0.17 -6.51 9.01 22.36 0.20 -6.31 15 13 C 0.09 2.99 11.18 84.68 0.95 3.94 15 14 N -0.52 -17.34 10.36 -195.85 -2.03 -19.37 15 15 C 0.09 3.01 11.18 84.68 0.95 3.96 15 16 C -0.20 -7.08 9.76 22.36 0.22 -6.86 15 17 C -0.13 -5.60 3.89 -10.79 -0.04 -5.64 15 18 C -0.17 -7.04 8.14 30.58 0.25 -6.80 15 19 C -0.17 -6.29 9.87 30.58 0.30 -5.98 15 20 H 0.28 15.82 3.57 -92.71 -0.33 15.49 15 21 H 0.13 4.82 8.06 -2.91 -0.02 4.80 15 22 H 0.18 4.51 8.06 -2.91 -0.02 4.49 15 23 H 0.18 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.13 4.45 8.01 -2.91 -0.02 4.42 15 25 H 0.08 3.58 8.11 -2.39 -0.02 3.57 15 26 H 0.08 3.30 7.43 -2.39 -0.02 3.28 15 27 H 0.09 3.51 8.14 -2.39 -0.02 3.50 15 28 H 0.10 3.25 8.14 -2.38 -0.02 3.23 15 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 15 Total: -1.00 -61.79 248.74 5.24 -56.55 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.56 Total: 18.37 kcal Atomic # 6 Polarization: -56.32 SS G_CDS: 3.37 Total: -52.95 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -1.74 Total: -73.52 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Total: -61.79 5.24 -56.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084332348.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.222 kcal (2) G-P(sol) polarization free energy of solvation -61.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds