Wall clock time and date at job start Mon Mar 30 2020 02:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99730 * 2 1 4 4 H 1.48507 * 109.46944 * 89.99993 * 3 2 1 5 5 H 1.48494 * 109.46976 * 329.99979 * 3 2 1 6 6 H 1.48502 * 109.46926 * 209.99779 * 3 2 1 7 7 C 1.37879 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99614 * 344.54700 * 7 2 1 9 9 C 1.50696 * 119.99949 * 164.55192 * 7 2 1 10 10 H 1.08999 * 109.57329 * 54.21925 * 9 7 2 11 11 C 1.53434 * 109.57188 * 293.84113 * 9 7 2 12 12 N 1.46920 * 107.79850 * 177.00264 * 11 9 7 13 13 C 1.39924 * 118.91139 * 44.68992 * 12 11 9 14 14 C 1.39079 * 119.13065 * 166.69454 * 13 12 11 15 15 C 1.38017 * 120.03104 * 179.61457 * 14 13 12 16 16 C 1.38303 * 119.91228 * 359.97438 * 15 14 13 17 17 C 1.38128 * 120.16368 * 0.08116 * 16 15 14 18 18 C 1.38506 * 120.30291 * 359.97438 * 17 16 15 19 19 C 1.50595 * 118.92945 * 179.82610 * 18 17 16 20 20 H 0.97005 * 119.99696 * 174.89750 * 1 2 3 21 21 H 1.09000 * 109.79162 * 296.56977 * 11 9 7 22 22 H 1.08994 * 109.79774 * 57.42328 * 11 9 7 23 23 H 0.96989 * 120.54595 * 224.69419 * 12 11 9 24 24 H 1.08005 * 119.98189 * 359.63069 * 14 13 12 25 25 H 1.08011 * 120.04357 * 179.97438 * 15 14 13 26 26 H 1.08002 * 119.92122 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.84784 * 179.97438 * 17 16 15 28 28 H 1.09002 * 109.30034 * 39.08572 * 19 18 17 29 29 H 1.09000 * 109.29500 * 279.71169 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6526 -0.7000 6 1 3.5467 1.4402 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4939 -2.1123 0.2502 9 6 3.4707 -1.2177 -0.3471 10 1 4.0087 -0.5171 0.2915 11 6 3.6566 -0.8234 -1.8182 12 7 5.0990 -0.7887 -2.0950 13 6 5.9036 -1.8321 -1.6240 14 6 7.2011 -1.9583 -2.1085 15 6 8.0135 -2.9758 -1.6507 16 6 7.5357 -3.8692 -0.7093 17 6 6.2470 -3.7466 -0.2274 18 6 5.4246 -2.7292 -0.6822 19 6 4.0239 -2.6268 -0.1388 20 1 -0.4850 -0.8368 -0.0747 21 1 3.1750 -1.5600 -2.4614 22 1 3.2231 0.1610 -1.9942 23 1 5.4873 -0.0545 -2.5960 24 1 7.5732 -1.2595 -2.8432 25 1 9.0210 -3.0743 -2.0272 26 1 8.1714 -4.6653 -0.3507 27 1 5.8790 -4.4474 0.5074 28 1 4.0329 -2.8574 0.9265 29 1 3.3844 -3.3435 -0.6540 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084766974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:13 Heat of formation + Delta-G solvation = 15.444705 kcal Electronic energy + Delta-G solvation = -12772.862274 eV Core-core repulsion = 10659.890906 eV Total energy + Delta-G solvation = -2112.971368 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.42924 -35.96451 -33.35022 -32.09937 -29.82183 -28.96993 -24.86153 -23.82864 -22.01675 -21.18820 -18.57262 -17.62412 -16.87850 -15.53858 -15.03426 -14.06721 -13.72551 -13.55261 -13.22184 -12.90334 -12.50351 -12.38117 -11.79481 -11.59113 -10.95639 -10.79732 -10.46088 -10.19511 -9.85109 -9.64105 -9.36928 -8.85906 -8.35910 -8.22286 -6.80924 -6.49774 -4.14203 1.85389 2.07749 3.35448 3.39590 3.54415 4.13125 4.31376 4.44397 5.20600 5.30798 5.35305 5.53160 5.78720 5.97367 6.01336 6.12612 6.23411 6.39245 6.54254 6.62806 6.64690 6.81565 6.97379 7.11527 7.13126 7.28130 7.43754 7.84876 8.13293 8.32082 8.36670 8.84097 9.54355 10.87884 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055197 B = 0.010141 C = 0.009179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.154318 B = 2760.281484 C = 3049.593364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 1.043 2.957 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.597 4.597 8 H 0.059 0.941 9 C 0.009 3.991 10 H 0.028 0.972 11 C 0.119 3.881 12 N -0.753 5.753 13 C 0.224 3.776 14 C -0.204 4.204 15 C -0.089 4.089 16 C -0.187 4.187 17 C -0.082 4.082 18 C -0.144 4.144 19 C -0.058 4.058 20 H 0.269 0.731 21 H 0.049 0.951 22 H 0.070 0.930 23 H 0.390 0.610 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.560 -3.082 -3.390 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.174 4.174 3 Si 0.871 3.129 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.635 4.635 8 H 0.077 0.923 9 C -0.011 4.011 10 H 0.047 0.953 11 C -0.004 4.004 12 N -0.381 5.381 13 C 0.120 3.880 14 C -0.227 4.227 15 C -0.108 4.108 16 C -0.207 4.207 17 C -0.101 4.101 18 C -0.148 4.148 19 C -0.095 4.095 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.223 0.777 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.108 -1.443 -3.286 12.629 hybrid contribution 0.314 -1.402 -0.261 1.460 sum 12.422 -2.845 -3.548 13.229 Atomic orbital electron populations 1.70797 1.07112 1.30606 1.45403 1.25794 0.96161 1.02436 0.93003 0.84100 0.75584 0.75721 0.77492 1.21194 1.21292 1.19788 1.21975 0.93184 0.96294 1.52035 0.92322 1.19299 0.97463 0.92780 0.91587 0.95344 1.22367 0.77717 1.00932 0.99397 1.45128 1.08137 1.23645 1.61144 1.17691 0.90063 0.88729 0.91553 1.20600 0.94327 1.02508 1.05302 1.20698 0.98473 0.94702 0.96882 1.20715 0.96485 1.01656 1.01889 1.20877 0.93535 0.96807 0.98889 1.19783 0.98510 0.97608 0.98931 1.20322 0.90017 0.99589 0.99543 0.92072 0.93281 0.91161 0.77678 0.86994 0.87037 0.87220 0.86762 0.91875 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.26 13.70 55.43 0.76 -26.50 15 2 C 0.03 0.88 5.35 -17.82 -0.10 0.78 15 3 Si 1.04 24.58 26.24 -169.99 -4.46 20.12 15 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.27 -5.87 5.52 56.52 0.31 -5.56 15 7 C -0.60 -16.37 8.82 -34.44 -0.30 -16.68 15 8 H 0.06 1.73 7.99 -52.49 -0.42 1.31 15 9 C 0.01 0.20 1.80 -91.65 -0.16 0.04 15 10 H 0.03 0.70 6.75 -51.93 -0.35 0.35 15 11 C 0.12 2.56 5.74 -3.59 -0.02 2.54 15 12 N -0.75 -14.01 5.80 -58.09 -0.34 -14.35 15 13 C 0.22 4.17 6.48 -83.72 -0.54 3.63 15 14 C -0.20 -3.25 9.88 -39.35 -0.39 -3.64 15 15 C -0.09 -1.29 10.05 -39.64 -0.40 -1.69 15 16 C -0.19 -2.79 10.04 -39.60 -0.40 -3.19 15 17 C -0.08 -1.37 9.66 -39.52 -0.38 -1.76 15 18 C -0.14 -2.77 5.76 -104.44 -0.60 -3.37 15 19 C -0.06 -1.22 5.03 -28.04 -0.14 -1.36 15 20 H 0.27 8.07 8.73 -40.82 -0.36 7.71 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.07 1.52 5.14 -51.93 -0.27 1.25 15 23 H 0.39 6.16 8.86 -40.82 -0.36 5.80 15 24 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 25 H 0.11 1.30 8.06 -52.48 -0.42 0.87 15 26 H 0.11 1.35 8.06 -52.49 -0.42 0.93 15 27 H 0.11 1.70 8.06 -52.49 -0.42 1.27 15 28 H 0.06 1.30 8.12 -51.93 -0.42 0.88 15 29 H 0.06 1.33 8.11 -51.93 -0.42 0.91 15 LS Contribution 238.15 15.07 3.59 3.59 Total: -1.00 -29.45 238.15 -7.48 -36.94 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.60 Total: 4.91 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -3.44 Total: -24.70 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.42 Total: -40.85 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.46 Total: 20.12 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.45 -7.48 -36.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084766974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.381 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds