Wall clock time and date at job start Mon Mar 30 2020 02:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99730 * 2 1 4 4 H 1.48507 * 109.46944 * 89.99993 * 3 2 1 5 5 H 1.48494 * 109.46976 * 329.99979 * 3 2 1 6 6 H 1.48502 * 109.46926 * 209.99779 * 3 2 1 7 7 C 1.37879 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99614 * 344.54700 * 7 2 1 9 9 C 1.50696 * 119.99949 * 164.55192 * 7 2 1 10 10 H 1.08999 * 109.57329 * 54.21925 * 9 7 2 11 11 C 1.53434 * 109.57188 * 293.84113 * 9 7 2 12 12 N 1.46920 * 107.79850 * 177.00264 * 11 9 7 13 13 C 1.39924 * 118.91139 * 44.68992 * 12 11 9 14 14 C 1.39079 * 119.13065 * 166.69454 * 13 12 11 15 15 C 1.38017 * 120.03104 * 179.61457 * 14 13 12 16 16 C 1.38303 * 119.91228 * 359.97438 * 15 14 13 17 17 C 1.38128 * 120.16368 * 0.08116 * 16 15 14 18 18 C 1.38506 * 120.30291 * 359.97438 * 17 16 15 19 19 C 1.50595 * 118.92945 * 179.82610 * 18 17 16 20 20 H 0.97005 * 119.99696 * 174.89750 * 1 2 3 21 21 H 1.09000 * 109.79162 * 296.56977 * 11 9 7 22 22 H 1.08994 * 109.79774 * 57.42328 * 11 9 7 23 23 H 0.96989 * 120.54595 * 224.69419 * 12 11 9 24 24 H 1.08005 * 119.98189 * 359.63069 * 14 13 12 25 25 H 1.08011 * 120.04357 * 179.97438 * 15 14 13 26 26 H 1.08002 * 119.92122 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.84784 * 179.97438 * 17 16 15 28 28 H 1.09002 * 109.30034 * 39.08572 * 19 18 17 29 29 H 1.09000 * 109.29500 * 279.71169 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6526 -0.7000 6 1 3.5467 1.4402 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4939 -2.1123 0.2502 9 6 3.4707 -1.2177 -0.3471 10 1 4.0087 -0.5171 0.2915 11 6 3.6566 -0.8234 -1.8182 12 7 5.0990 -0.7887 -2.0950 13 6 5.9036 -1.8321 -1.6240 14 6 7.2011 -1.9583 -2.1085 15 6 8.0135 -2.9758 -1.6507 16 6 7.5357 -3.8692 -0.7093 17 6 6.2470 -3.7466 -0.2274 18 6 5.4246 -2.7292 -0.6822 19 6 4.0239 -2.6268 -0.1388 20 1 -0.4850 -0.8368 -0.0747 21 1 3.1750 -1.5600 -2.4614 22 1 3.2231 0.1610 -1.9942 23 1 5.4873 -0.0545 -2.5960 24 1 7.5732 -1.2595 -2.8432 25 1 9.0210 -3.0743 -2.0272 26 1 8.1714 -4.6653 -0.3507 27 1 5.8790 -4.4474 0.5074 28 1 4.0329 -2.8574 0.9265 29 1 3.3844 -3.3435 -0.6540 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084766974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:13 Heat of formation + Delta-G solvation = -3.333538 kcal Electronic energy + Delta-G solvation = -12773.676559 eV Core-core repulsion = 10659.890906 eV Total energy + Delta-G solvation = -2113.785654 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82407 -37.50429 -35.13572 -33.86341 -31.40123 -30.34167 -26.68083 -25.48105 -23.34739 -22.79038 -20.25727 -19.71854 -18.24667 -16.95282 -16.46993 -15.78707 -15.40153 -15.01670 -14.76938 -14.41080 -14.17524 -13.95932 -13.48097 -13.18939 -12.69233 -12.35566 -12.04348 -11.72533 -11.60912 -11.39938 -11.05257 -10.71649 -10.53131 -9.52479 -8.76220 -8.20711 -6.41131 0.59229 0.81059 1.46072 1.49838 1.70294 2.46661 2.69344 3.02133 3.06673 3.99022 4.10758 4.27159 4.35143 4.44021 4.63747 4.67070 4.73023 4.80496 4.89421 5.01986 5.22037 5.37073 5.49641 5.55181 5.72773 5.79031 5.91745 6.00863 6.16055 6.50476 6.53669 7.05943 7.36176 8.60506 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.055197 B = 0.010141 C = 0.009179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.154318 B = 2760.281484 C = 3049.593364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 1.086 2.914 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.600 4.600 8 H 0.020 0.980 9 C 0.007 3.993 10 H 0.025 0.975 11 C 0.130 3.870 12 N -0.750 5.750 13 C 0.199 3.801 14 C -0.200 4.200 15 C -0.082 4.082 16 C -0.181 4.181 17 C -0.090 4.090 18 C -0.176 4.176 19 C -0.052 4.052 20 H 0.254 0.746 21 H 0.035 0.965 22 H 0.071 0.929 23 H 0.406 0.594 24 H 0.138 0.862 25 H 0.150 0.850 26 H 0.142 0.858 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.189 -2.708 -4.206 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.215 4.215 3 Si 0.907 3.093 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.639 4.639 8 H 0.038 0.962 9 C -0.012 4.012 10 H 0.043 0.957 11 C 0.006 3.994 12 N -0.381 5.381 13 C 0.096 3.904 14 C -0.222 4.222 15 C -0.100 4.100 16 C -0.201 4.201 17 C -0.109 4.109 18 C -0.181 4.181 19 C -0.089 4.089 20 H 0.063 0.937 21 H 0.053 0.947 22 H 0.089 0.911 23 H 0.242 0.758 24 H 0.156 0.844 25 H 0.168 0.832 26 H 0.159 0.841 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.776 -1.103 -4.108 16.339 hybrid contribution -0.750 -1.691 0.021 1.849 sum 15.026 -2.794 -4.086 15.820 Atomic orbital electron populations 1.70926 1.08356 1.29735 1.48265 1.27219 0.96066 1.06199 0.92016 0.83583 0.75816 0.71637 0.78304 1.20399 1.20952 1.16367 1.22162 0.95428 0.94854 1.51413 0.96183 1.19230 0.94590 0.94313 0.93112 0.95713 1.21909 0.79962 1.00361 0.97208 1.44837 1.06627 1.24698 1.61965 1.17962 0.91363 0.88874 0.92222 1.20927 0.93000 1.03153 1.05141 1.21198 0.99877 0.93293 0.95670 1.21127 0.95723 1.02172 1.01065 1.21082 0.94314 0.96322 0.99148 1.19706 0.97548 0.99915 1.00898 1.20137 0.91829 0.97659 0.99266 0.93694 0.94670 0.91105 0.75845 0.84441 0.83184 0.84059 0.85792 0.92432 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.70 21.45 0.29 -58.15 15 2 C -0.02 -0.96 5.35 84.66 0.45 -0.51 15 3 Si 1.09 49.33 26.24 68.60 1.80 51.13 15 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.24 -9.57 5.52 99.48 0.55 -9.02 15 7 C -0.60 -34.27 8.82 25.60 0.23 -34.04 15 8 H 0.02 1.25 7.99 -2.91 -0.02 1.23 15 9 C 0.01 0.36 1.80 -11.46 -0.02 0.34 15 10 H 0.02 1.20 6.75 -2.39 -0.02 1.19 15 11 C 0.13 5.55 5.74 86.44 0.50 6.05 15 12 N -0.75 -26.43 5.80 -337.69 -1.96 -28.39 15 13 C 0.20 6.95 6.48 38.14 0.25 7.20 15 14 C -0.20 -5.52 9.88 22.42 0.22 -5.29 15 15 C -0.08 -1.96 10.05 22.23 0.22 -1.74 15 16 C -0.18 -4.61 10.04 22.26 0.22 -4.39 15 17 C -0.09 -2.82 9.66 22.31 0.22 -2.60 15 18 C -0.18 -6.61 5.76 -19.75 -0.11 -6.73 15 19 C -0.05 -2.24 5.03 29.75 0.15 -2.10 15 20 H 0.25 16.08 8.73 -92.70 -0.81 15.27 15 21 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.07 2.97 5.14 -2.39 -0.01 2.96 15 23 H 0.41 11.63 8.86 -92.72 -0.82 10.80 15 24 H 0.14 3.06 8.06 -2.91 -0.02 3.03 15 25 H 0.15 2.48 8.06 -2.90 -0.02 2.46 15 26 H 0.14 2.71 8.06 -2.91 -0.02 2.69 15 27 H 0.12 3.50 8.06 -2.91 -0.02 3.47 15 28 H 0.06 2.46 8.12 -2.39 -0.02 2.45 15 29 H 0.04 2.00 8.11 -2.39 -0.02 1.98 15 Total: -1.00 -65.33 238.15 2.59 -62.74 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.13 Total: 16.48 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 2.32 Total: -43.82 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.66 Total: -86.54 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.80 Total: 51.13 kcal Total: -65.33 2.59 -62.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084766974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.408 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds