Wall clock time and date at job start Mon Mar 30 2020 02:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00180 * 2 1 4 4 H 1.48503 * 109.46785 * 240.00126 * 3 2 1 5 5 H 1.48501 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47439 * 119.99765 * 3 2 1 7 7 C 1.38818 * 119.99615 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99196 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00383 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00236 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47338 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.88276 * 46.67282 * 11 10 9 13 13 C 1.52265 * 113.20511 * 178.03086 * 11 10 9 14 14 C 1.50566 * 87.22647 * 114.72092 * 13 11 10 15 15 C 1.38806 * 147.30000 * 179.57692 * 14 13 11 16 16 C 1.38073 * 120.08994 * 179.74197 * 15 14 13 17 17 C 1.38234 * 119.98008 * 0.26077 * 16 15 14 18 18 C 1.38064 * 119.97913 * 359.97438 * 17 16 15 19 19 C 1.37717 * 92.77078 * 359.79691 * 14 13 11 20 20 H 0.97002 * 120.00184 * 0.02562 * 1 2 3 21 21 H 0.97008 * 119.99899 * 359.97438 * 9 7 2 22 22 H 1.09007 * 109.46968 * 60.00170 * 10 9 7 23 23 H 1.08995 * 109.47451 * 300.00811 * 10 9 7 24 24 H 1.08995 * 113.97789 * 0.07781 * 13 11 10 25 25 H 1.08999 * 113.27893 * 229.25925 * 13 11 10 26 26 H 1.08002 * 119.95920 * 0.02562 * 15 14 13 27 27 H 1.07998 * 120.00450 * 180.23221 * 16 15 14 28 28 H 1.07994 * 120.00576 * 180.02562 * 17 16 15 29 29 H 1.08000 * 119.95055 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.2643 -4.6943 -0.7291 13 6 1.7369 -6.1846 -0.0469 14 6 1.1770 -6.4279 1.3295 15 6 1.0565 -7.2977 2.4045 16 6 0.3401 -6.9207 3.5231 17 6 -0.2626 -5.6776 3.5707 18 6 -0.1475 -4.8136 2.5000 19 6 0.5722 -5.1915 1.3749 20 1 -0.4850 0.8400 -0.0004 21 1 0.3554 -2.3881 0.0005 22 1 2.6846 -3.7146 0.8906 23 1 2.6847 -3.7146 -0.8893 24 1 2.8256 -6.1408 -0.0734 25 1 1.3214 -6.8433 -0.8095 26 1 1.5275 -8.2689 2.3680 27 1 0.2504 -7.5971 4.3602 28 1 -0.8227 -5.3821 4.4455 29 1 -0.6189 -3.8426 2.5376 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085578195.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:10 Heat of formation + Delta-G solvation = 69.696638 kcal Electronic energy + Delta-G solvation = -12294.885078 eV Core-core repulsion = 10184.266250 eV Total energy + Delta-G solvation = -2110.618828 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.35227 -35.90410 -33.92700 -31.02479 -30.29572 -27.54819 -25.70915 -23.32636 -22.20746 -20.88689 -19.44732 -17.01541 -16.39058 -15.27954 -14.80553 -14.34746 -14.10154 -13.38229 -13.11842 -12.75637 -12.69598 -12.06176 -11.81318 -11.55545 -10.94572 -10.82690 -10.68281 -10.44153 -10.16934 -9.91710 -9.64319 -8.84392 -8.50890 -8.30036 -6.88655 -5.73229 -3.01662 1.61702 1.67940 3.46416 3.50386 3.51644 4.04742 4.50348 4.61188 4.76941 4.95615 5.24498 5.35348 5.44052 5.60530 5.75157 5.87991 5.94938 5.99354 6.17837 6.27559 6.33869 6.39084 6.63951 6.73081 6.78239 6.86599 7.14688 7.30751 7.72244 8.45530 9.56704 10.14521 10.49989 11.49733 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.051214 B = 0.007595 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.598047 B = 3685.600578 C = 3988.236539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.169 3.831 11 C -0.055 4.055 12 H 0.097 0.903 13 C -0.067 4.067 14 C -0.140 4.140 15 C -0.102 4.102 16 C -0.129 4.129 17 C -0.122 4.122 18 C -0.087 4.087 19 C -0.100 4.100 20 H 0.255 0.745 21 H 0.384 0.616 22 H 0.021 0.979 23 H 0.026 0.974 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 -13.567 3.548 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.041 3.959 11 C -0.073 4.073 12 H 0.115 0.885 13 C -0.105 4.105 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.147 4.147 17 C -0.140 4.140 18 C -0.105 4.105 19 C -0.100 4.100 20 H 0.065 0.935 21 H 0.218 0.782 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.056 -13.437 3.563 13.942 hybrid contribution 0.089 0.966 0.188 0.988 sum 1.145 -12.472 3.751 13.074 Atomic orbital electron populations 1.69652 1.05106 1.25713 1.57822 1.24727 0.95512 0.97630 1.03072 0.86264 0.78516 0.83549 0.77844 1.21272 1.21692 1.21294 1.19194 0.91012 0.84179 1.42654 0.91256 1.42308 1.05867 0.99823 1.89462 1.20530 0.92612 0.84681 0.98065 1.21384 0.98263 0.95145 0.92508 0.88472 1.21488 1.00921 0.95985 0.92065 1.21938 0.99665 0.95834 0.96521 1.20322 1.00142 0.98896 0.92650 1.20879 0.99162 0.96881 0.97730 1.20954 1.00617 0.94222 0.98250 1.20615 0.98179 0.99718 0.91989 1.21889 0.96184 0.95834 0.96047 0.93495 0.78220 0.96071 0.95587 0.89131 0.89590 0.86976 0.86262 0.86090 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.91 15 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 15 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 15 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 15 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 15 9 N -0.73 -19.06 5.60 -59.91 -0.34 -19.40 15 10 C 0.17 3.54 5.95 -4.04 -0.02 3.52 15 11 C -0.05 -0.95 3.91 -92.51 -0.36 -1.32 15 12 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 13 C -0.07 -0.94 7.76 -28.61 -0.22 -1.17 15 14 C -0.14 -2.18 7.42 -104.96 -0.78 -2.95 15 15 C -0.10 -1.42 10.06 -39.43 -0.40 -1.81 15 16 C -0.13 -1.71 10.04 -39.64 -0.40 -2.11 15 17 C -0.12 -1.79 10.04 -39.65 -0.40 -2.19 15 18 C -0.09 -1.51 10.06 -39.43 -0.40 -1.91 15 19 C -0.10 -1.77 6.86 -104.96 -0.72 -2.49 15 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 21 H 0.38 10.50 7.67 -40.82 -0.31 10.19 15 22 H 0.02 0.47 8.04 -51.93 -0.42 0.05 15 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 15 24 H 0.09 1.17 7.98 -51.93 -0.41 0.76 15 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 26 H 0.11 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 15 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 29 H 0.12 2.22 8.06 -52.49 -0.42 1.80 15 LS Contribution 253.61 15.07 3.82 3.82 Total: -1.00 -31.30 253.61 -8.41 -39.70 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.65 Total: 6.01 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -3.94 Total: -19.92 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.39 Total: -47.31 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.30 -8.41 -39.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085578195.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.400 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds