Wall clock time and date at job start Mon Mar 30 2020 02:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48505 * 109.47022 * 269.99563 * 3 2 1 5 5 H 1.48500 * 109.47204 * 29.99199 * 3 2 1 6 6 H 1.48496 * 109.47308 * 149.99862 * 3 2 1 7 7 C 1.38815 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99653 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00099 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00271 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47496 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.82940 * 314.66922 * 11 10 9 13 13 C 1.53519 * 113.58627 * 183.55829 * 11 10 9 14 14 C 1.51614 * 87.24369 * 245.32891 * 13 11 10 15 15 C 1.38383 * 147.52533 * 180.02562 * 14 13 11 16 16 C 1.38088 * 120.32418 * 180.02562 * 15 14 13 17 17 C 1.38249 * 119.95795 * 359.96327 * 16 15 14 18 18 C 1.38099 * 119.95202 * 0.02562 * 17 16 15 19 19 C 1.38368 * 120.32996 * 359.97438 * 18 17 16 20 20 H 0.96999 * 120.00279 * 0.02562 * 1 2 3 21 21 H 0.97006 * 120.00092 * 0.02562 * 9 7 2 22 22 H 1.09007 * 109.46727 * 59.99995 * 10 9 7 23 23 H 1.09003 * 109.47351 * 300.00724 * 10 9 7 24 24 H 1.08997 * 113.59265 * 359.91549 * 13 11 10 25 25 H 1.09003 * 113.58701 * 130.74057 * 13 11 10 26 26 H 1.07992 * 119.83705 * 359.96882 * 15 14 13 27 27 H 1.08000 * 120.02390 * 180.02562 * 16 15 14 28 28 H 1.07995 * 120.02415 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.83352 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0009 12 1 5.9031 -1.4202 -0.7143 13 6 6.4769 -3.4597 -0.0853 14 6 6.9751 -3.1281 1.3077 15 6 7.7876 -3.4794 2.3714 16 6 7.8263 -2.6958 3.5077 17 6 7.0511 -1.5537 3.5855 18 6 6.2387 -1.1985 2.5268 19 6 6.1960 -1.9801 1.3858 20 1 -0.4850 0.8400 -0.0004 21 1 3.8646 -0.3620 -0.0004 22 1 3.8485 -3.0434 -0.8882 23 1 3.8491 -3.0415 0.8918 24 1 5.8943 -4.3797 -0.1326 25 1 7.2526 -3.4093 -0.8494 26 1 8.3937 -4.3713 2.3128 27 1 8.4626 -2.9743 4.3348 28 1 7.0809 -0.9399 4.4735 29 1 5.6336 -0.3061 2.5898 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085578197.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:12 Heat of formation + Delta-G solvation = 72.246909 kcal Electronic energy + Delta-G solvation = -12341.000048 eV Core-core repulsion = 10230.491809 eV Total energy + Delta-G solvation = -2110.508239 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.26403 -35.99663 -34.03534 -31.27480 -30.50306 -27.84350 -25.94396 -23.28521 -21.95264 -20.98490 -19.67491 -17.50459 -16.49141 -15.33713 -14.81939 -14.39384 -14.32738 -13.53784 -13.11035 -12.87006 -12.68584 -12.20908 -11.94112 -11.91153 -11.17813 -10.94688 -10.71933 -10.55747 -10.15069 -10.03297 -9.57497 -8.88509 -8.65097 -8.39092 -7.21032 -5.75007 -3.10268 1.48819 1.58084 3.38738 3.41806 3.46332 3.93231 4.35234 4.60672 4.60957 4.72385 5.14639 5.21924 5.32462 5.55346 5.62042 5.74571 5.78364 5.83134 5.94262 6.05321 6.18124 6.26376 6.54151 6.61493 6.66246 6.74852 7.00514 7.18795 8.01113 8.43987 9.23056 9.95438 10.15766 11.43541 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.044269 B = 0.008705 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.343197 B = 3215.904574 C = 3548.284701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.173 3.827 11 C -0.056 4.056 12 H 0.095 0.905 13 C -0.065 4.065 14 C -0.137 4.137 15 C -0.100 4.100 16 C -0.127 4.127 17 C -0.121 4.121 18 C -0.091 4.091 19 C -0.107 4.107 20 H 0.259 0.741 21 H 0.361 0.639 22 H 0.036 0.964 23 H 0.030 0.970 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.517 -5.106 3.519 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.046 3.954 11 C -0.075 4.075 12 H 0.114 0.886 13 C -0.102 4.102 14 C -0.137 4.137 15 C -0.118 4.118 16 C -0.145 4.145 17 C -0.139 4.139 18 C -0.109 4.109 19 C -0.107 4.107 20 H 0.069 0.931 21 H 0.194 0.806 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 16.275 -5.189 3.537 17.445 hybrid contribution 0.525 1.307 0.210 1.424 sum 16.800 -3.882 3.746 17.645 Atomic orbital electron populations 1.69700 1.05097 1.25799 1.57712 1.24657 0.95221 0.97164 1.02075 0.86553 0.79243 0.84996 0.77819 1.21031 1.21712 1.20322 1.19066 0.80588 0.94782 1.42861 0.89204 1.42674 1.04021 1.02135 1.91160 1.20495 0.86388 0.89579 0.98962 1.21818 0.96724 0.97004 0.91945 0.88644 1.21861 0.97809 0.98724 0.91788 1.22322 0.97188 0.97687 0.96510 1.20226 0.99219 0.99850 0.92546 1.20903 1.00323 0.95637 0.97599 1.20963 0.97210 0.97443 0.98251 1.20440 0.98464 0.99863 0.92145 1.22306 0.96947 0.95460 0.95941 0.93072 0.80631 0.94635 0.95207 0.88917 0.89384 0.86880 0.86114 0.86010 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.79 13.97 55.49 0.78 -29.01 15 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 15 3 Si 0.88 22.43 27.74 -169.99 -4.71 17.72 15 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 15 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 15 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 15 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 15 9 N -0.75 -18.44 5.41 -59.91 -0.32 -18.77 15 10 C 0.17 3.45 6.01 -4.05 -0.02 3.42 15 11 C -0.06 -0.92 3.93 -91.07 -0.36 -1.28 15 12 H 0.10 1.50 8.14 -51.93 -0.42 1.08 15 13 C -0.06 -0.84 7.86 -27.18 -0.21 -1.05 15 14 C -0.14 -2.01 7.49 -103.87 -0.78 -2.79 15 15 C -0.10 -1.31 10.03 -39.58 -0.40 -1.71 15 16 C -0.13 -1.59 10.04 -39.63 -0.40 -1.99 15 17 C -0.12 -1.66 10.04 -39.63 -0.40 -2.06 15 18 C -0.09 -1.49 10.03 -39.58 -0.40 -1.88 15 19 C -0.11 -1.78 6.93 -103.88 -0.72 -2.50 15 20 H 0.26 7.85 8.31 -40.82 -0.34 7.51 15 21 H 0.36 8.62 5.53 -40.82 -0.23 8.39 15 22 H 0.04 0.69 8.14 -51.92 -0.42 0.27 15 23 H 0.03 0.63 8.03 -51.93 -0.42 0.21 15 24 H 0.09 1.11 8.00 -51.93 -0.42 0.70 15 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.11 1.20 8.06 -52.49 -0.42 0.77 15 27 H 0.12 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 29 H 0.12 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 250.76 15.07 3.78 3.78 Total: -1.00 -32.24 250.76 -8.03 -40.27 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.61 Total: 5.01 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -3.94 Total: -19.00 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.45 Total: -47.78 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.24 -8.03 -40.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085578197.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.518 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds