Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48505 * 109.47022 * 269.99563 * 3 2 1 5 5 H 1.48500 * 109.47204 * 29.99199 * 3 2 1 6 6 H 1.48496 * 109.47308 * 149.99862 * 3 2 1 7 7 C 1.38815 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99653 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00099 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00271 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47496 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.82940 * 314.66922 * 11 10 9 13 13 C 1.53519 * 113.58627 * 183.55829 * 11 10 9 14 14 C 1.51614 * 87.24369 * 245.32891 * 13 11 10 15 15 C 1.38383 * 147.52533 * 180.02562 * 14 13 11 16 16 C 1.38088 * 120.32418 * 180.02562 * 15 14 13 17 17 C 1.38249 * 119.95795 * 359.96327 * 16 15 14 18 18 C 1.38099 * 119.95202 * 0.02562 * 17 16 15 19 19 C 1.38368 * 120.32996 * 359.97438 * 18 17 16 20 20 H 0.96999 * 120.00279 * 0.02562 * 1 2 3 21 21 H 0.97006 * 120.00092 * 0.02562 * 9 7 2 22 22 H 1.09007 * 109.46727 * 59.99995 * 10 9 7 23 23 H 1.09003 * 109.47351 * 300.00724 * 10 9 7 24 24 H 1.08997 * 113.59265 * 359.91549 * 13 11 10 25 25 H 1.09003 * 113.58701 * 130.74057 * 13 11 10 26 26 H 1.07992 * 119.83705 * 359.96882 * 15 14 13 27 27 H 1.08000 * 120.02390 * 180.02562 * 16 15 14 28 28 H 1.07995 * 120.02415 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.83352 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0009 12 1 5.9031 -1.4202 -0.7143 13 6 6.4769 -3.4597 -0.0853 14 6 6.9751 -3.1281 1.3077 15 6 7.7876 -3.4794 2.3714 16 6 7.8263 -2.6958 3.5077 17 6 7.0511 -1.5537 3.5855 18 6 6.2387 -1.1985 2.5268 19 6 6.1960 -1.9801 1.3858 20 1 -0.4850 0.8400 -0.0004 21 1 3.8646 -0.3620 -0.0004 22 1 3.8485 -3.0434 -0.8882 23 1 3.8491 -3.0415 0.8918 24 1 5.8943 -4.3797 -0.1326 25 1 7.2526 -3.4093 -0.8494 26 1 8.3937 -4.3713 2.3128 27 1 8.4626 -2.9743 4.3348 28 1 7.0809 -0.9399 4.4735 29 1 5.6336 -0.3061 2.5898 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085578197.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = 52.387254 kcal Electronic energy + Delta-G solvation = -12341.861227 eV Core-core repulsion = 10230.491809 eV Total energy + Delta-G solvation = -2111.369419 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37866 -37.38361 -35.77334 -33.35512 -31.62771 -29.30436 -27.32234 -24.76413 -23.68167 -22.19968 -20.92770 -19.54826 -17.57202 -16.87029 -16.27803 -16.08894 -15.53330 -15.06250 -14.69528 -14.52602 -13.93701 -13.73683 -13.44136 -13.00712 -12.88333 -12.55057 -12.29520 -12.07596 -11.83227 -11.70683 -11.22062 -10.98485 -9.73698 -9.49159 -9.31747 -8.05800 -5.39500 0.42200 0.49319 1.34950 1.38234 1.45679 2.45516 2.85555 3.20540 3.28884 3.41826 3.54013 3.96780 4.14700 4.22255 4.26179 4.42112 4.70681 4.76704 4.81322 4.92907 4.98708 5.03107 5.24302 5.29793 5.51755 5.60437 5.71129 5.89047 6.13586 6.18165 7.04155 7.79874 7.99910 9.15877 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.044269 B = 0.008705 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.343197 B = 3215.904574 C = 3548.284701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.238 4.238 8 H 0.056 0.944 9 N -0.757 5.757 10 C 0.172 3.828 11 C -0.059 4.059 12 H 0.099 0.901 13 C -0.048 4.048 14 C -0.141 4.141 15 C -0.104 4.104 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.119 4.119 19 C -0.147 4.147 20 H 0.259 0.741 21 H 0.365 0.635 22 H 0.042 0.958 23 H 0.015 0.985 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.144 0.856 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.480 -5.429 3.904 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.182 1.182 7 C -0.369 4.369 8 H 0.074 0.926 9 N -0.402 5.402 10 C 0.046 3.954 11 C -0.077 4.077 12 H 0.117 0.883 13 C -0.085 4.085 14 C -0.141 4.141 15 C -0.121 4.121 16 C -0.138 4.138 17 C -0.145 4.145 18 C -0.137 4.137 19 C -0.147 4.147 20 H 0.068 0.932 21 H 0.198 0.802 22 H 0.060 0.940 23 H 0.033 0.967 24 H 0.121 0.879 25 H 0.135 0.865 26 H 0.161 0.839 27 H 0.174 0.826 28 H 0.161 0.839 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.284 -5.542 3.919 20.444 hybrid contribution -0.395 1.296 0.148 1.363 sum 18.889 -4.246 4.067 19.783 Atomic orbital electron populations 1.69880 1.07100 1.26787 1.59588 1.25494 0.96123 1.01221 1.02442 0.85404 0.78457 0.79581 0.78340 1.19948 1.21967 1.18163 1.19055 0.82655 0.93603 1.41585 0.92560 1.42687 1.02519 1.04079 1.90944 1.20605 0.88929 0.87562 0.98296 1.21758 0.94110 0.99279 0.92562 0.88251 1.21839 0.97620 0.97187 0.91847 1.22593 0.97103 0.96859 0.97549 1.20648 0.98770 1.00760 0.91952 1.21358 0.99592 0.94498 0.98372 1.21267 0.96696 0.98327 0.98168 1.20591 0.99741 0.99942 0.93443 1.22484 0.98754 0.97194 0.96307 0.93212 0.80156 0.94011 0.96660 0.87916 0.86502 0.83866 0.82647 0.83934 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.31 13.97 21.65 0.30 -64.01 15 2 C -0.06 -3.71 5.50 84.86 0.47 -3.24 15 3 Si 0.96 46.69 27.74 68.60 1.90 48.59 15 4 H -0.27 -12.88 7.11 99.48 0.71 -12.18 15 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 15 6 H -0.26 -11.55 6.52 99.48 0.65 -10.90 15 7 C -0.24 -14.12 10.47 84.03 0.88 -13.24 15 8 H 0.06 3.64 8.06 -2.91 -0.02 3.61 15 9 N -0.76 -37.14 5.41 -343.45 -1.86 -39.00 15 10 C 0.17 6.86 6.01 86.38 0.52 7.38 15 11 C -0.06 -1.84 3.93 -11.09 -0.04 -1.88 15 12 H 0.10 2.99 8.14 -2.39 -0.02 2.97 15 13 C -0.05 -1.12 7.86 30.30 0.24 -0.88 15 14 C -0.14 -3.78 7.49 -19.38 -0.15 -3.93 15 15 C -0.10 -2.34 10.03 22.27 0.22 -2.11 15 16 C -0.12 -2.60 10.04 22.24 0.22 -2.37 15 17 C -0.13 -3.23 10.04 22.24 0.22 -3.00 15 18 C -0.12 -3.83 10.03 22.27 0.22 -3.60 15 19 C -0.15 -4.78 6.93 -19.38 -0.13 -4.91 15 20 H 0.26 16.06 8.31 -92.71 -0.77 15.29 15 21 H 0.37 17.19 5.53 -92.70 -0.51 16.68 15 22 H 0.04 1.61 8.14 -2.38 -0.02 1.59 15 23 H 0.02 0.66 8.03 -2.39 -0.02 0.64 15 24 H 0.10 2.19 8.00 -2.39 -0.02 2.17 15 25 H 0.12 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.14 2.34 8.06 -2.91 -0.02 2.32 15 27 H 0.16 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.14 2.89 8.06 -2.91 -0.02 2.86 15 29 H 0.10 3.44 8.06 -2.91 -0.02 3.41 15 Total: -1.00 -70.76 250.76 3.59 -67.17 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.57 Total: 19.04 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 2.67 Total: -31.80 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -1.55 Total: -103.01 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.90 Total: 48.59 kcal Total: -70.76 3.59 -67.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085578197.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.558 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds