Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33736 * 126.07907 * 2 1 4 4 C 1.30923 * 109.78101 * 179.97438 * 3 2 1 5 5 N 1.35464 * 108.88101 * 0.02562 * 4 3 2 6 6 C 1.36695 * 134.39729 * 180.02562 * 5 4 3 7 7 C 1.36134 * 120.65034 * 179.97438 * 6 5 4 8 8 N 1.32326 * 122.42654 * 359.95272 * 7 6 5 9 9 C 1.33932 * 121.05907 * 0.02645 * 8 7 6 10 10 C 1.40141 * 120.72603 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99580 * 188.73742 * 10 9 8 12 12 C 1.40092 * 120.00269 * 8.74123 * 10 9 8 13 13 N 1.30726 * 119.99623 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00212 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46780 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47178 * 119.99942 * 14 12 10 17 17 H 1.48494 * 109.47196 * 240.00355 * 14 12 10 18 18 C 1.35915 * 126.07205 * 179.97438 * 2 1 3 19 19 H 1.08997 * 109.47271 * 95.87950 * 1 2 3 20 20 H 1.08997 * 109.47388 * 215.88219 * 1 2 3 21 21 H 1.09011 * 109.46745 * 335.87829 * 1 2 3 22 22 H 1.08001 * 125.56030 * 180.02562 * 4 3 2 23 23 H 1.07997 * 119.67413 * 359.97438 * 6 5 4 24 24 H 1.08000 * 118.78975 * 179.97438 * 7 6 5 25 25 H 0.97008 * 119.99776 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2945 1.0809 0.0000 4 6 3.5511 0.7134 0.0006 5 7 3.6122 -0.6398 0.0004 6 6 4.6310 -1.5512 0.0011 7 6 4.3674 -2.8868 0.0012 8 7 3.1342 -3.3666 0.0014 9 6 2.0742 -2.5480 0.0010 10 6 0.7712 -3.0638 0.0007 11 1 -0.0711 -2.4030 -0.1416 12 6 0.5611 -4.4366 0.1851 13 7 1.5807 -5.2365 0.3570 14 14 -1.1758 -5.1239 0.1854 15 1 -2.1452 -4.0194 -0.0278 16 1 -1.3138 -6.1208 -0.9066 17 1 -1.4491 -5.7780 1.4902 18 6 2.3072 -1.0986 0.0005 19 1 -0.3634 -0.1053 -1.0222 20 1 -0.3634 -0.8326 0.6023 21 1 -0.3633 0.9380 0.4200 22 1 4.4005 1.3805 0.0011 23 1 5.6551 -1.2083 0.0017 24 1 5.1953 -3.5803 0.0014 25 1 1.4352 -6.1870 0.4851 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089195447.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = 83.009916 kcal Electronic energy + Delta-G solvation = -12621.269014 eV Core-core repulsion = 10407.687150 eV Total energy + Delta-G solvation = -2213.581864 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.38883 -36.65610 -34.38551 -32.40705 -30.22732 -29.22337 -26.55206 -25.25568 -22.38140 -21.55942 -19.38417 -17.94090 -16.79330 -15.34440 -15.18034 -14.69729 -14.20275 -13.41251 -13.02527 -12.43867 -12.32421 -11.80428 -11.74664 -11.67223 -11.40675 -11.08932 -10.60661 -10.21114 -9.88161 -9.27948 -9.15697 -8.15515 -7.84183 -6.81693 -6.58453 -4.85486 2.25146 2.81120 2.91818 2.94370 2.97598 3.66762 4.02808 4.03667 4.39838 5.40614 5.49951 5.79911 5.88215 5.99018 6.14076 6.31409 6.44894 6.59269 6.75610 6.82351 6.87179 7.12516 7.53724 7.70218 7.86405 8.17259 8.45284 8.56949 8.97784 9.80864 9.98488 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.038599 B = 0.013623 C = 0.010137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.233865 B = 2054.865010 C = 2761.382512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.000 4.000 3 N -0.490 5.490 4 C 0.102 3.898 5 N -0.317 5.317 6 C -0.236 4.236 7 C 0.140 3.860 8 N -0.547 5.547 9 C 0.289 3.711 10 C -0.368 4.368 11 H 0.105 0.895 12 C 0.057 3.943 13 N -0.679 5.679 14 Si 0.918 3.082 15 H -0.253 1.253 16 H -0.268 1.268 17 H -0.268 1.268 18 C -0.052 4.052 19 H 0.059 0.941 20 H 0.074 0.926 21 H 0.057 0.943 22 H 0.191 0.809 23 H 0.127 0.873 24 H 0.133 0.867 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 0.640 -0.072 1.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.138 4.138 3 N -0.208 5.208 4 C -0.174 4.174 5 N 0.014 4.986 6 C -0.360 4.360 7 C -0.014 4.014 8 N -0.266 5.266 9 C 0.157 3.843 10 C -0.399 4.399 11 H 0.123 0.877 12 C -0.173 4.173 13 N -0.298 5.298 14 Si 0.741 3.259 15 H -0.176 1.176 16 H -0.193 1.193 17 H -0.193 1.193 18 C -0.171 4.171 19 H 0.077 0.923 20 H 0.093 0.907 21 H 0.076 0.924 22 H 0.208 0.792 23 H 0.145 0.855 24 H 0.150 0.850 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.810 0.388 -0.033 1.852 hybrid contribution 0.341 -0.141 0.023 0.369 sum -1.470 0.248 -0.009 1.490 Atomic orbital electron populations 1.20016 0.88276 1.01752 1.01496 1.20132 0.95734 0.87119 1.10771 1.69861 1.00239 1.30414 1.20295 1.24344 0.96441 0.80796 1.15783 1.42297 1.06934 1.06602 1.42724 1.21275 0.90707 0.90021 1.34044 1.21870 0.96431 0.90500 0.92605 1.69405 0.95962 1.33505 1.27688 1.19392 0.94129 0.82021 0.88716 1.19824 0.92242 0.93173 1.34687 0.87737 1.26284 0.99847 0.97089 0.94079 1.70130 1.32119 1.05109 1.22447 0.86059 0.80788 0.79965 0.79103 1.17570 1.19271 1.19298 1.21511 0.84167 0.96938 1.14442 0.92275 0.90705 0.92448 0.79189 0.85538 0.85007 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.12 9.37 36.00 0.34 -0.79 15 2 C 0.00 0.01 7.13 -82.60 -0.59 -0.58 15 3 N -0.49 -11.57 11.22 -10.49 -0.12 -11.69 15 4 C 0.10 2.28 12.85 -89.64 -1.15 1.12 15 5 N -0.32 -7.77 2.97 -60.75 -0.18 -7.95 15 6 C -0.24 -5.43 11.05 -16.14 -0.18 -5.61 15 7 C 0.14 3.36 11.01 -18.09 -0.20 3.16 15 8 N -0.55 -14.76 8.08 -10.16 -0.08 -14.84 15 9 C 0.29 7.75 6.69 -82.77 -0.55 7.19 15 10 C -0.37 -9.05 8.79 -38.17 -0.34 -9.38 15 11 H 0.10 2.33 5.06 -52.49 -0.27 2.07 15 12 C 0.06 1.32 5.49 -17.33 -0.10 1.22 15 13 N -0.68 -16.60 11.54 55.55 0.64 -15.96 15 14 Si 0.92 16.57 29.56 -169.99 -5.02 11.55 15 15 H -0.25 -4.40 7.11 56.52 0.40 -4.00 15 16 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 17 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 18 C -0.05 -1.35 6.80 -82.30 -0.56 -1.91 15 19 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 20 H 0.07 1.41 6.22 -51.93 -0.32 1.09 15 21 H 0.06 1.01 8.14 -51.92 -0.42 0.58 15 22 H 0.19 3.39 8.06 -52.49 -0.42 2.96 15 23 H 0.13 2.48 8.06 -52.49 -0.42 2.05 15 24 H 0.13 2.72 8.06 -52.49 -0.42 2.30 15 25 H 0.28 6.09 8.29 -40.82 -0.34 5.76 15 LS Contribution 223.91 15.07 3.37 3.37 Total: -1.00 -29.83 223.91 -6.55 -36.38 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -1.84 Total: 4.71 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.33 Total: -5.57 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.26 Total: -50.45 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.02 Total: 11.55 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -29.83 -6.55 -36.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195447.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.387 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds