Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33736 * 126.07907 * 2 1 4 4 C 1.30923 * 109.78101 * 179.97438 * 3 2 1 5 5 N 1.35464 * 108.88101 * 0.02562 * 4 3 2 6 6 C 1.36695 * 134.39729 * 180.02562 * 5 4 3 7 7 C 1.36134 * 120.65034 * 179.97438 * 6 5 4 8 8 N 1.32326 * 122.42654 * 359.95272 * 7 6 5 9 9 C 1.33932 * 121.05907 * 0.02645 * 8 7 6 10 10 C 1.40141 * 120.72603 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99580 * 188.73742 * 10 9 8 12 12 C 1.40092 * 120.00269 * 8.74123 * 10 9 8 13 13 N 1.30726 * 119.99623 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00212 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46780 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47178 * 119.99942 * 14 12 10 17 17 H 1.48494 * 109.47196 * 240.00355 * 14 12 10 18 18 C 1.35915 * 126.07205 * 179.97438 * 2 1 3 19 19 H 1.08997 * 109.47271 * 95.87950 * 1 2 3 20 20 H 1.08997 * 109.47388 * 215.88219 * 1 2 3 21 21 H 1.09011 * 109.46745 * 335.87829 * 1 2 3 22 22 H 1.08001 * 125.56030 * 180.02562 * 4 3 2 23 23 H 1.07997 * 119.67413 * 359.97438 * 6 5 4 24 24 H 1.08000 * 118.78975 * 179.97438 * 7 6 5 25 25 H 0.97008 * 119.99776 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2945 1.0809 0.0000 4 6 3.5511 0.7134 0.0006 5 7 3.6122 -0.6398 0.0004 6 6 4.6310 -1.5512 0.0011 7 6 4.3674 -2.8868 0.0012 8 7 3.1342 -3.3666 0.0014 9 6 2.0742 -2.5480 0.0010 10 6 0.7712 -3.0638 0.0007 11 1 -0.0711 -2.4030 -0.1416 12 6 0.5611 -4.4366 0.1851 13 7 1.5807 -5.2365 0.3570 14 14 -1.1758 -5.1239 0.1854 15 1 -2.1452 -4.0194 -0.0278 16 1 -1.3138 -6.1208 -0.9066 17 1 -1.4491 -5.7780 1.4902 18 6 2.3072 -1.0986 0.0005 19 1 -0.3634 -0.1053 -1.0222 20 1 -0.3634 -0.8326 0.6023 21 1 -0.3633 0.9380 0.4200 22 1 4.4005 1.3805 0.0011 23 1 5.6551 -1.2083 0.0017 24 1 5.1953 -3.5803 0.0014 25 1 1.4352 -6.1870 0.4851 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089195447.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = 65.819755 kcal Electronic energy + Delta-G solvation = -12622.014435 eV Core-core repulsion = 10407.687150 eV Total energy + Delta-G solvation = -2214.327285 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.17871 -38.46706 -36.15210 -34.19084 -32.02044 -30.94812 -28.35495 -27.00144 -24.19929 -23.35014 -21.15248 -19.71580 -18.60183 -17.14444 -16.82834 -16.51205 -15.93176 -15.02915 -14.73557 -14.11993 -13.93224 -13.43543 -13.42786 -13.35431 -13.04831 -12.70923 -12.14228 -11.81218 -11.58156 -11.09305 -10.92846 -10.00203 -9.68059 -8.56017 -8.39471 -6.70463 0.45513 0.97776 1.43937 1.52613 1.62701 2.15515 2.26028 2.29829 2.65355 3.63228 3.77218 4.07965 4.15066 4.23316 4.47564 4.64693 4.88443 4.99216 5.06116 5.14969 5.16497 5.35789 5.76558 5.92517 6.07652 6.37938 6.62674 6.80550 7.17469 8.06604 8.21065 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.038599 B = 0.013623 C = 0.010137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.233865 B = 2054.865010 C = 2761.382512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.007 4.007 3 N -0.506 5.506 4 C 0.111 3.889 5 N -0.334 5.334 6 C -0.238 4.238 7 C 0.117 3.883 8 N -0.585 5.585 9 C 0.256 3.744 10 C -0.384 4.384 11 H 0.121 0.879 12 C 0.014 3.986 13 N -0.718 5.718 14 Si 0.998 3.002 15 H -0.239 1.239 16 H -0.263 1.263 17 H -0.262 1.262 18 C -0.093 4.093 19 H 0.072 0.928 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.234 0.766 23 H 0.161 0.839 24 H 0.156 0.844 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 1.121 -0.098 2.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.144 4.144 3 N -0.224 5.224 4 C -0.165 4.165 5 N -0.003 5.003 6 C -0.362 4.362 7 C -0.036 4.036 8 N -0.305 5.305 9 C 0.124 3.876 10 C -0.415 4.415 11 H 0.138 0.862 12 C -0.212 4.212 13 N -0.337 5.337 14 Si 0.816 3.184 15 H -0.162 1.162 16 H -0.188 1.188 17 H -0.187 1.187 18 C -0.210 4.210 19 H 0.091 0.909 20 H 0.095 0.905 21 H 0.095 0.905 22 H 0.250 0.750 23 H 0.179 0.821 24 H 0.173 0.827 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.755 0.880 -0.060 2.892 hybrid contribution 0.729 -0.216 0.032 0.761 sum -2.026 0.663 -0.027 2.132 Atomic orbital electron populations 1.20110 0.85748 1.02884 1.02586 1.20816 0.97583 0.86643 1.09380 1.69920 1.00897 1.30370 1.21230 1.25286 0.97443 0.80614 1.13134 1.42576 1.06886 1.07435 1.43444 1.21735 0.91930 0.89752 1.32763 1.22327 0.96454 0.91797 0.92984 1.69354 0.97017 1.34573 1.29531 1.19867 0.95050 0.82839 0.89821 1.20323 0.92205 0.94566 1.34438 0.86180 1.27340 1.04363 0.96683 0.92837 1.70203 1.34842 1.05929 1.22753 0.84900 0.74953 0.79347 0.79230 1.16170 1.18773 1.18692 1.21810 0.85421 0.97303 1.16487 0.90899 0.90478 0.90523 0.75006 0.82128 0.82694 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 9.37 71.23 0.67 -1.42 15 2 C -0.01 -0.31 7.13 41.73 0.30 -0.02 15 3 N -0.51 -23.12 11.22 -187.11 -2.10 -25.22 15 4 C 0.11 4.75 12.85 180.00 2.31 7.07 15 5 N -0.33 -16.14 2.97 -346.12 -1.03 -17.17 15 6 C -0.24 -10.79 11.05 83.45 0.92 -9.86 15 7 C 0.12 5.66 11.01 84.13 0.93 6.59 15 8 N -0.58 -32.31 8.08 -186.07 -1.50 -33.81 15 9 C 0.26 13.95 6.69 41.53 0.28 14.23 15 10 C -0.38 -19.00 8.79 23.18 0.20 -18.79 15 11 H 0.12 5.30 5.06 -2.91 -0.01 5.29 15 12 C 0.01 0.65 5.49 85.31 0.47 1.12 15 13 N -0.72 -35.53 11.54 21.85 0.25 -35.28 15 14 Si 1.00 33.01 29.56 68.60 2.03 35.04 15 15 H -0.24 -7.32 7.11 99.48 0.71 -6.61 15 16 H -0.26 -8.45 7.11 99.48 0.71 -7.74 15 17 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 18 C -0.09 -4.83 6.80 39.82 0.27 -4.55 15 19 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 20 H 0.08 2.82 6.22 -2.39 -0.01 2.80 15 21 H 0.08 2.53 8.14 -2.38 -0.02 2.51 15 22 H 0.23 7.48 8.06 -2.91 -0.02 7.46 15 23 H 0.16 5.94 8.06 -2.91 -0.02 5.92 15 24 H 0.16 6.42 8.06 -2.91 -0.02 6.39 15 25 H 0.29 12.70 8.29 -92.70 -0.77 11.93 15 Total: -1.00 -64.55 223.91 5.21 -59.34 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 1.21 Total: 22.75 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 6.35 Total: -5.64 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -4.38 Total: -111.48 kcal Atomic # 14 Polarization: 33.01 SS G_CDS: 2.03 Total: 35.04 kcal Total: -64.55 5.21 -59.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195447.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.157 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds