Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86800 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47307 * 275.40845 * 3 2 1 5 5 H 1.48507 * 109.47129 * 35.41159 * 3 2 1 6 6 H 1.48500 * 109.46865 * 155.40840 * 3 2 1 7 7 C 1.39949 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00114 * 341.72470 * 7 2 1 9 9 C 1.40380 * 120.00277 * 161.72862 * 7 2 1 10 10 C 1.40819 * 120.60148 * 330.20256 * 9 7 2 11 11 C 1.37482 * 120.25907 * 180.02562 * 10 9 7 12 12 C 1.39151 * 121.42437 * 359.97438 * 11 10 9 13 13 N 1.38783 * 119.60664 * 179.97438 * 12 11 10 14 14 C 1.40180 * 120.78771 * 0.27734 * 12 11 10 15 15 N 1.37088 * 133.68353 * 180.44152 * 14 12 11 16 16 H 0.97001 * 126.01336 * 359.24975 * 15 14 12 17 17 N 1.40068 * 107.97837 * 179.49857 * 15 14 12 18 18 C 1.30584 * 109.51235 * 359.74642 * 17 15 14 19 19 C 1.40271 * 119.71336 * 359.44987 * 14 12 11 20 20 H 0.97001 * 119.99544 * 359.97438 * 1 2 3 21 21 H 1.08007 * 119.87115 * 359.97438 * 10 9 7 22 22 H 1.07994 * 119.28509 * 180.02562 * 11 10 9 23 23 H 0.97001 * 119.99751 * 0.02562 * 13 12 11 24 24 H 0.96997 * 119.99942 * 179.72127 * 13 12 11 25 25 H 1.07995 * 125.66177 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3762 2.1124 -1.3938 5 1 1.5022 2.6170 0.8113 6 1 3.5929 1.4098 0.5826 7 6 2.0086 -1.2120 -0.0005 8 1 1.5094 -2.1239 0.2924 9 6 3.3593 -1.2426 -0.3817 10 6 3.8627 -0.3137 -1.3128 11 6 5.1866 -0.3504 -1.6814 12 6 6.0611 -1.2947 -1.1524 13 7 7.3903 -1.2978 -1.5517 14 6 5.6141 -2.2469 -0.2259 15 7 6.2275 -3.2672 0.4540 16 1 7.1617 -3.5188 0.3836 17 7 5.2667 -3.8861 1.2638 18 6 4.1158 -3.2888 1.1093 19 6 4.2724 -2.2426 0.1832 20 1 -0.4849 0.8401 0.0004 21 1 3.2058 0.4299 -1.7395 22 1 5.5560 0.3697 -2.3964 23 1 7.7048 -0.6440 -2.1955 24 1 8.0057 -1.9509 -1.1835 25 1 3.1965 -3.5541 1.6101 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089200530.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = 79.172351 kcal Electronic energy + Delta-G solvation = -12494.289536 eV Core-core repulsion = 10280.541263 eV Total energy + Delta-G solvation = -2213.748273 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.10298 -36.30265 -34.51249 -32.61453 -30.25201 -28.81927 -28.33455 -24.13454 -21.61756 -21.22788 -20.18254 -17.80863 -16.87321 -16.05826 -15.07617 -14.76938 -14.09160 -13.79760 -13.56130 -12.88211 -12.59717 -12.13817 -11.52629 -11.21795 -11.01452 -10.67680 -10.07703 -10.02183 -9.69055 -9.47626 -8.94472 -8.63268 -7.43744 -7.03055 -6.44651 -4.27529 2.11807 2.83953 3.12192 3.18122 3.35877 3.65364 3.66524 3.98889 4.48108 4.82309 5.38930 5.69184 5.89586 6.19885 6.32977 6.57995 6.74219 6.86235 7.12316 7.40025 7.40581 7.78514 7.85457 8.15643 8.27194 8.45489 8.50487 8.61044 8.71904 8.79955 9.97412 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.013916 C = 0.010807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.466480 B = 2011.638200 C = 2590.248558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.083 3.917 3 Si 0.918 3.082 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.242 1.242 7 C -0.421 4.421 8 H 0.094 0.906 9 C 0.131 3.869 10 C -0.272 4.272 11 C -0.081 4.081 12 C 0.043 3.957 13 N -0.899 5.899 14 C 0.123 3.877 15 N -0.525 5.525 16 H 0.423 0.577 17 N -0.315 5.315 18 C 0.093 3.907 19 C -0.219 4.219 20 H 0.288 0.712 21 H 0.104 0.896 22 H 0.097 0.903 23 H 0.385 0.615 24 H 0.376 0.624 25 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 0.726 -1.262 7.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.165 1.165 7 C -0.450 4.450 8 H 0.112 0.888 9 C 0.124 3.876 10 C -0.293 4.293 11 C -0.107 4.107 12 C -0.058 4.058 13 N -0.444 5.444 14 C 0.005 3.995 15 N -0.239 5.239 16 H 0.264 0.736 17 N -0.133 5.133 18 C -0.099 4.099 19 C -0.229 4.229 20 H 0.098 0.902 21 H 0.121 0.879 22 H 0.115 0.885 23 H 0.211 0.789 24 H 0.201 0.799 25 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.642 -0.172 -0.566 7.665 hybrid contribution 0.635 1.274 -0.653 1.566 sum 8.277 1.103 -1.219 8.439 Atomic orbital electron populations 1.69720 1.08223 1.30627 1.33510 1.26269 0.94751 1.02052 0.90684 0.86172 0.81327 0.79139 0.78890 1.19586 1.22125 1.16479 1.19313 0.93063 0.96167 1.36427 0.88783 1.18002 0.91434 0.89022 0.89115 1.20376 0.95191 1.06847 1.06925 1.19820 0.93299 0.97314 1.00265 1.16032 0.85594 1.00465 1.03695 1.41511 1.07704 1.41127 1.54096 1.18302 0.93290 0.91563 0.96381 1.45648 1.10130 1.28887 1.39209 0.73585 1.76698 0.98431 1.21755 1.16387 1.23446 0.95933 0.93574 0.96928 1.19608 0.92529 1.04723 1.05991 0.90197 0.87852 0.88470 0.78889 0.79900 0.80554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.38 13.93 55.55 0.77 -19.60 15 2 C 0.08 2.10 5.41 -17.31 -0.09 2.00 15 3 Si 0.92 20.37 24.52 -169.99 -4.17 16.20 15 4 H -0.27 -5.80 6.71 56.52 0.38 -5.42 15 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.24 -5.58 6.86 56.52 0.39 -5.19 15 7 C -0.42 -10.95 9.50 -38.14 -0.36 -11.31 15 8 H 0.09 2.51 8.06 -52.48 -0.42 2.09 15 9 C 0.13 3.28 5.26 -104.69 -0.55 2.73 15 10 C -0.27 -6.45 7.16 -38.88 -0.28 -6.73 15 11 C -0.08 -1.74 9.76 -39.52 -0.39 -2.13 15 12 C 0.04 0.89 6.76 -83.65 -0.57 0.33 15 13 N -0.90 -14.20 9.04 32.53 0.29 -13.90 15 14 C 0.12 2.70 7.15 -84.02 -0.60 2.10 15 15 N -0.52 -10.27 7.45 32.44 0.24 -10.03 15 16 H 0.42 6.67 8.86 -182.62 -1.62 5.05 15 17 N -0.32 -6.63 12.60 30.73 0.39 -6.25 15 18 C 0.09 2.02 11.90 -17.20 -0.20 1.81 15 19 C -0.22 -5.24 6.19 -104.82 -0.65 -5.89 15 20 H 0.29 6.64 8.30 -40.82 -0.34 6.30 15 21 H 0.10 2.43 4.74 -52.48 -0.25 2.18 15 22 H 0.10 1.80 8.06 -52.49 -0.42 1.38 15 23 H 0.38 5.22 8.82 -40.82 -0.36 4.86 15 24 H 0.38 5.16 8.72 -40.82 -0.36 4.81 15 25 H 0.18 3.40 8.06 -52.49 -0.42 2.97 15 LS Contribution 220.91 15.07 3.33 3.33 Total: -1.00 -28.33 220.91 -5.85 -34.19 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -3.02 Total: 13.15 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.69 Total: -17.08 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 1.70 Total: -49.78 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.17 Total: 16.20 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.33 -5.85 -34.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089200530.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.358 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds