Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86796 * 120.00255 * 2 1 4 4 H 1.48504 * 109.47188 * 84.95894 * 3 2 1 5 5 H 1.48500 * 109.47534 * 204.95426 * 3 2 1 6 6 H 1.48505 * 109.47478 * 324.95985 * 3 2 1 7 7 C 1.39955 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00071 * 30.04718 * 7 2 1 9 9 C 1.41413 * 119.99772 * 210.04834 * 7 2 1 10 10 C 1.41104 * 120.66288 * 205.19845 * 9 7 2 11 11 C 1.38016 * 118.20072 * 179.76001 * 10 9 7 12 12 C 1.38622 * 119.41936 * 0.53898 * 11 10 9 13 13 C 1.50701 * 119.34111 * 179.72001 * 12 11 10 14 14 C 1.53783 * 113.61502 * 59.52308 * 13 12 11 15 15 C 1.53951 * 87.02037 * 220.05207 * 14 13 12 16 16 C 1.53774 * 87.11300 * 25.36232 * 15 14 13 17 17 N 1.32064 * 121.32121 * 359.69963 * 12 11 10 18 18 C 1.31500 * 121.98138 * 0.02562 * 17 12 11 19 19 H 0.96995 * 120.00074 * 174.57795 * 1 2 3 20 20 H 1.08003 * 120.89756 * 0.02562 * 10 9 7 21 21 H 1.07994 * 120.29354 * 180.24179 * 11 10 9 22 22 H 1.08996 * 112.84938 * 190.72409 * 13 12 11 23 23 H 1.09003 * 113.61107 * 334.57258 * 14 13 12 24 24 H 1.09003 * 113.61441 * 105.47033 * 14 13 12 25 25 H 1.09003 * 113.53190 * 270.81305 * 15 14 13 26 26 H 1.08997 * 113.74373 * 139.94956 * 15 14 13 27 27 H 1.08998 * 113.61683 * 220.09408 * 16 15 14 28 28 H 1.08995 * 113.61719 * 89.18874 * 16 15 14 29 29 H 1.07992 * 119.79960 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3832 2.1079 1.3947 5 1 3.5890 1.4117 -0.5907 6 1 1.4970 2.6196 -0.8039 7 6 2.0079 -1.2121 -0.0005 8 1 1.5767 -2.0843 -0.4692 9 6 3.2795 -1.2946 0.6127 10 6 4.2145 -2.2683 0.2020 11 6 5.4422 -2.3001 0.8318 12 6 5.7118 -1.3925 1.8443 13 6 7.0505 -1.4329 2.5351 14 6 8.2406 -1.2171 1.5853 15 6 8.9730 -2.3103 2.3843 16 6 7.5855 -2.8571 2.7590 17 7 4.8190 -0.4929 2.2155 18 6 3.6353 -0.4113 1.6486 19 1 -0.4850 -0.8362 -0.0794 20 1 3.9775 -2.9670 -0.5867 21 1 6.1846 -3.0287 0.5417 22 1 7.0853 -0.8081 3.4276 23 1 8.0314 -1.4970 0.5528 24 1 8.6964 -0.2309 1.6736 25 1 9.5348 -1.9249 3.2352 26 1 9.5574 -2.9900 1.7642 27 1 7.5132 -3.1931 3.7934 28 1 7.1969 -3.5862 2.0480 29 1 2.9319 0.3380 1.9803 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095704602.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = 27.078948 kcal Electronic energy + Delta-G solvation = -12529.829351 eV Core-core repulsion = 10417.362482 eV Total energy + Delta-G solvation = -2112.466869 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27554 -37.40256 -34.00987 -31.23023 -30.28851 -26.53619 -25.24264 -23.46920 -22.38265 -20.56063 -19.06903 -18.20568 -15.99644 -15.43848 -14.56616 -14.19576 -14.10885 -13.42646 -12.98636 -12.63658 -12.16141 -12.03349 -11.55745 -11.46375 -11.02527 -10.93937 -10.34716 -10.30367 -10.03351 -9.97008 -9.78771 -9.09577 -8.52352 -8.07188 -7.78392 -7.40950 -4.62748 2.48604 2.66153 3.18016 3.31718 3.48395 3.93138 4.41269 5.00599 5.01923 5.10746 5.24273 5.67024 5.73557 5.85102 6.00272 6.06149 6.12899 6.15646 6.29355 6.35493 6.41283 6.62234 6.78572 6.89251 7.01783 7.36425 7.43922 7.55752 7.77746 8.17498 8.37404 8.58905 9.49513 9.81381 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.061828 B = 0.009072 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.759694 B = 3085.649060 C = 3306.280875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.049 3.951 3 Si 1.063 2.937 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.079 0.921 9 C 0.048 3.952 10 C -0.193 4.193 11 C -0.118 4.118 12 C -0.013 4.013 13 C -0.034 4.034 14 C -0.133 4.133 15 C -0.143 4.143 16 C -0.136 4.136 17 N -0.450 5.450 18 C -0.033 4.033 19 H 0.290 0.710 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 -1.857 1.438 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.174 4.174 3 Si 0.888 3.112 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.097 0.903 9 C 0.044 3.956 10 C -0.219 4.219 11 C -0.138 4.138 12 C -0.150 4.150 13 C -0.053 4.053 14 C -0.171 4.171 15 C -0.180 4.180 16 C -0.174 4.174 17 N -0.157 5.157 18 C -0.195 4.195 19 H 0.102 0.898 20 H 0.122 0.878 21 H 0.120 0.880 22 H 0.107 0.893 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.843 0.296 2.148 10.078 hybrid contribution -0.318 -2.466 -0.856 2.630 sum 9.525 -2.170 1.292 9.854 Atomic orbital electron populations 1.70539 1.08354 1.33685 1.28891 1.27312 0.95371 1.04637 0.90036 0.83722 0.75892 0.73033 0.78598 1.19418 1.19048 1.20876 1.20542 1.01284 0.98612 1.33461 0.90303 1.18602 0.92956 0.92271 0.91818 1.21321 0.93934 1.03826 1.02788 1.21293 0.96776 0.98637 0.97072 1.20036 0.95737 0.98318 1.00876 1.20975 0.90305 0.96268 0.97740 1.23038 0.96742 0.98356 0.98980 1.22842 0.96425 0.98743 1.00034 1.23063 0.95760 0.97328 1.01224 1.66774 1.02112 1.19909 1.26939 1.22517 0.94421 1.04093 0.98500 0.89839 0.87789 0.88003 0.89273 0.90274 0.92030 0.90670 0.92002 0.92061 0.90041 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.71 13.65 55.55 0.76 -19.95 15 2 C 0.05 1.27 5.23 -17.34 -0.09 1.18 15 3 Si 1.06 24.07 25.48 -169.99 -4.33 19.74 15 4 H -0.27 -5.89 6.61 56.52 0.37 -5.51 15 5 H -0.27 -6.13 7.11 56.52 0.40 -5.72 15 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.51 -13.62 9.37 -37.73 -0.35 -13.97 15 8 H 0.08 2.14 8.06 -52.49 -0.42 1.72 15 9 C 0.05 1.26 5.13 -106.67 -0.55 0.71 15 10 C -0.19 -4.60 9.94 -38.58 -0.38 -4.99 15 11 C -0.12 -2.55 8.55 -39.52 -0.34 -2.89 15 12 C -0.01 -0.29 6.21 -82.35 -0.51 -0.80 15 13 C -0.03 -0.60 4.14 -90.96 -0.38 -0.97 15 14 C -0.13 -2.01 7.55 -25.83 -0.20 -2.21 15 15 C -0.14 -1.81 8.09 -25.83 -0.21 -2.02 15 16 C -0.14 -2.01 7.45 -25.92 -0.19 -2.20 15 17 N -0.45 -11.19 10.24 -8.78 -0.09 -11.28 15 18 C -0.03 -0.85 8.77 -16.76 -0.15 -1.00 15 19 H 0.29 7.32 8.73 -40.82 -0.36 6.96 15 20 H 0.10 2.30 8.06 -52.48 -0.42 1.88 15 21 H 0.10 1.88 6.66 -52.49 -0.35 1.53 15 22 H 0.09 1.59 8.14 -51.93 -0.42 1.16 15 23 H 0.08 1.23 7.68 -51.93 -0.40 0.83 15 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 28 H 0.08 1.22 6.29 -51.93 -0.33 0.89 15 29 H 0.13 3.35 5.06 -52.49 -0.27 3.08 15 LS Contribution 241.86 15.07 3.64 3.64 Total: -1.00 -27.42 241.86 -6.84 -34.26 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.48 Total: 2.74 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -3.35 Total: -29.15 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.67 Total: -31.24 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.33 Total: 19.74 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.42 -6.84 -34.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095704602.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.338 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds