Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30814 * 1 3 3 Si 1.86796 * 120.00255 * 2 1 4 4 H 1.48504 * 109.47188 * 84.95894 * 3 2 1 5 5 H 1.48500 * 109.47534 * 204.95426 * 3 2 1 6 6 H 1.48505 * 109.47478 * 324.95985 * 3 2 1 7 7 C 1.39955 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00071 * 30.04718 * 7 2 1 9 9 C 1.41413 * 119.99772 * 210.04834 * 7 2 1 10 10 C 1.41104 * 120.66288 * 205.19845 * 9 7 2 11 11 C 1.38016 * 118.20072 * 179.76001 * 10 9 7 12 12 C 1.38622 * 119.41936 * 0.53898 * 11 10 9 13 13 C 1.50701 * 119.34111 * 179.72001 * 12 11 10 14 14 C 1.53783 * 113.61502 * 59.52308 * 13 12 11 15 15 C 1.53951 * 87.02037 * 220.05207 * 14 13 12 16 16 C 1.53774 * 87.11300 * 25.36232 * 15 14 13 17 17 N 1.32064 * 121.32121 * 359.69963 * 12 11 10 18 18 C 1.31500 * 121.98138 * 0.02562 * 17 12 11 19 19 H 0.96995 * 120.00074 * 174.57795 * 1 2 3 20 20 H 1.08003 * 120.89756 * 0.02562 * 10 9 7 21 21 H 1.07994 * 120.29354 * 180.24179 * 11 10 9 22 22 H 1.08996 * 112.84938 * 190.72409 * 13 12 11 23 23 H 1.09003 * 113.61107 * 334.57258 * 14 13 12 24 24 H 1.09003 * 113.61441 * 105.47033 * 14 13 12 25 25 H 1.09003 * 113.53190 * 270.81305 * 15 14 13 26 26 H 1.08997 * 113.74373 * 139.94956 * 15 14 13 27 27 H 1.08998 * 113.61683 * 220.09408 * 16 15 14 28 28 H 1.08995 * 113.61719 * 89.18874 * 16 15 14 29 29 H 1.07992 * 119.79960 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3832 2.1079 1.3947 5 1 3.5890 1.4117 -0.5907 6 1 1.4970 2.6196 -0.8039 7 6 2.0079 -1.2121 -0.0005 8 1 1.5767 -2.0843 -0.4692 9 6 3.2795 -1.2946 0.6127 10 6 4.2145 -2.2683 0.2020 11 6 5.4422 -2.3001 0.8318 12 6 5.7118 -1.3925 1.8443 13 6 7.0505 -1.4329 2.5351 14 6 8.2406 -1.2171 1.5853 15 6 8.9730 -2.3103 2.3843 16 6 7.5855 -2.8571 2.7590 17 7 4.8190 -0.4929 2.2155 18 6 3.6353 -0.4113 1.6486 19 1 -0.4850 -0.8362 -0.0794 20 1 3.9775 -2.9670 -0.5867 21 1 6.1846 -3.0287 0.5417 22 1 7.0853 -0.8081 3.4276 23 1 8.0314 -1.4970 0.5528 24 1 8.6964 -0.2309 1.6736 25 1 9.5348 -1.9249 3.2352 26 1 9.5574 -2.9900 1.7642 27 1 7.5132 -3.1931 3.7934 28 1 7.1969 -3.5862 2.0480 29 1 2.9319 0.3380 1.9803 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095704602.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = 11.268091 kcal Electronic energy + Delta-G solvation = -12530.514961 eV Core-core repulsion = 10417.362482 eV Total energy + Delta-G solvation = -2113.152479 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 203.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91711 -38.89945 -35.92970 -33.13962 -32.10203 -28.19399 -26.40036 -25.09311 -24.24883 -22.30951 -20.64773 -19.87467 -17.58713 -17.14846 -16.03150 -15.91542 -15.88273 -15.12490 -14.70483 -14.39322 -13.83795 -13.31078 -13.14438 -12.94733 -12.81513 -12.58610 -12.17070 -11.89553 -11.45575 -11.25341 -11.12059 -10.95462 -10.42702 -9.96180 -9.68841 -9.36831 -6.64157 0.60715 0.75696 1.33981 1.49242 1.68684 2.09324 2.50197 3.38298 3.69340 3.87247 3.95731 4.17728 4.26821 4.31112 4.48860 4.56456 4.85194 4.90910 4.95495 5.00387 5.08079 5.16363 5.16686 5.35760 5.41032 5.52904 5.60725 5.76724 5.88792 6.15641 6.45416 6.62536 7.59435 7.83068 Molecular weight = 203.10amu Principal moments of inertia in cm(-1) A = 0.061828 B = 0.009072 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.759694 B = 3085.649060 C = 3306.280875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.025 3.975 3 Si 1.093 2.907 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.198 4.198 11 C -0.115 4.115 12 C 0.000 4.000 13 C -0.053 4.053 14 C -0.132 4.132 15 C -0.122 4.122 16 C -0.132 4.132 17 N -0.472 5.472 18 C -0.051 4.051 19 H 0.285 0.715 20 H 0.117 0.883 21 H 0.142 0.858 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.886 -2.328 1.867 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.193 4.193 3 Si 0.913 3.087 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.224 4.224 11 C -0.134 4.134 12 C -0.139 4.139 13 C -0.072 4.072 14 C -0.170 4.170 15 C -0.160 4.160 16 C -0.170 4.170 17 N -0.180 5.180 18 C -0.211 4.211 19 H 0.097 0.903 20 H 0.135 0.865 21 H 0.160 0.840 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.750 -0.170 2.577 13.009 hybrid contribution -1.016 -2.445 -0.918 2.802 sum 11.734 -2.615 1.660 12.136 Atomic orbital electron populations 1.70586 1.08645 1.33414 1.30926 1.28120 0.95504 1.06429 0.89267 0.83334 0.74786 0.71344 0.79193 1.18648 1.19987 1.18752 1.20496 1.02466 0.98607 1.35604 0.92282 1.18766 0.93333 0.93408 0.92192 1.21661 0.94451 1.03231 1.03071 1.21678 0.96633 0.98974 0.96156 1.21005 0.96699 0.96296 0.99895 1.21274 0.88591 0.99078 0.98283 1.23033 0.95579 0.99970 0.98416 1.22774 0.95444 0.97497 1.00247 1.23060 0.96800 0.95119 1.02027 1.66876 1.02297 1.21304 1.27481 1.22501 0.95124 1.04532 0.98957 0.90345 0.86510 0.84024 0.89553 0.90632 0.91316 0.88959 0.89854 0.91083 0.90003 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.69 13.65 21.83 0.30 -43.40 15 2 C 0.03 1.34 5.23 85.26 0.45 1.79 15 3 Si 1.09 49.19 25.48 68.60 1.75 50.94 15 4 H -0.26 -11.32 6.61 99.48 0.66 -10.66 15 5 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 6 H -0.26 -10.83 7.11 99.48 0.71 -10.13 15 7 C -0.54 -29.95 9.37 23.47 0.22 -29.73 15 8 H 0.06 3.37 8.06 -2.91 -0.02 3.35 15 9 C 0.03 1.45 5.13 -21.19 -0.11 1.34 15 10 C -0.20 -9.26 9.94 22.92 0.23 -9.03 15 11 C -0.12 -4.68 8.55 22.31 0.19 -4.49 15 12 C 0.00 -0.01 6.21 42.62 0.26 0.25 15 13 C -0.05 -1.71 4.14 -11.01 -0.05 -1.76 15 14 C -0.13 -3.45 7.55 31.18 0.24 -3.21 15 15 C -0.12 -2.47 8.09 31.18 0.25 -2.22 15 16 C -0.13 -3.33 7.45 31.12 0.23 -3.10 15 17 N -0.47 -23.10 10.24 -181.70 -1.86 -24.97 15 18 C -0.05 -2.67 8.77 85.35 0.75 -1.93 15 19 H 0.29 15.03 8.73 -92.71 -0.81 14.22 15 20 H 0.12 5.06 8.06 -2.91 -0.02 5.04 15 21 H 0.14 4.61 6.66 -2.91 -0.02 4.59 15 22 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 23 H 0.08 2.04 7.68 -2.39 -0.02 2.02 15 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 15 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 28 H 0.08 2.06 6.29 -2.39 -0.02 2.05 15 29 H 0.13 6.54 5.06 -2.91 -0.01 6.52 15 Total: -1.00 -59.21 241.86 3.90 -55.31 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.05 Total: 14.21 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 2.66 Total: -52.09 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.56 Total: -68.36 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.75 Total: 50.94 kcal Total: -59.21 3.90 -55.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095704602.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.581 kcal (2) G-P(sol) polarization free energy of solvation -59.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds