Wall clock time and date at job start Mon Mar 30 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39626 * 120.56649 * 280.36799 * 3 2 1 5 5 N 1.31662 * 120.55475 * 179.97438 * 4 3 2 6 6 C 1.31953 * 121.88870 * 359.97438 * 5 4 3 7 7 C 1.38309 * 121.09194 * 359.71670 * 6 5 4 8 8 C 1.38386 * 119.31369 * 0.56372 * 7 6 5 9 9 C 1.50705 * 120.85967 * 179.73306 * 8 7 6 10 10 H 1.08998 * 109.47221 * 144.71784 * 9 8 7 11 11 N 1.46898 * 109.47390 * 24.71115 * 9 8 7 12 12 C 1.50705 * 109.46551 * 264.71319 * 9 8 7 13 13 H 1.07999 * 120.00223 * 5.19452 * 12 9 8 14 14 C 1.37878 * 120.00009 * 185.18679 * 12 9 8 15 15 N 1.31511 * 120.00199 * 186.62982 * 14 12 9 16 16 Si 1.86797 * 119.99733 * 6.63935 * 14 12 9 17 17 H 1.48503 * 109.46905 * 269.99485 * 16 14 12 18 18 H 1.48501 * 109.47590 * 29.99385 * 16 14 12 19 19 H 1.48497 * 109.47337 * 149.99634 * 16 14 12 20 20 H 1.07997 * 119.72554 * 0.02562 * 4 3 2 21 21 H 1.07998 * 119.45278 * 180.02562 * 6 5 4 22 22 H 1.08002 * 120.34630 * 180.31197 * 7 6 5 23 23 H 1.00897 * 111.00041 * 173.35459 * 11 9 8 24 24 H 1.00900 * 111.00023 * 297.31590 * 11 9 8 25 25 H 0.97000 * 119.99921 * 354.94489 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2781 -0.2154 1.1826 5 7 4.5947 -0.2153 1.1823 6 6 5.2915 -0.0143 0.0798 7 6 4.6628 0.2008 -1.1332 8 6 3.2801 0.2164 -1.1863 9 6 2.5591 0.4536 -2.4883 10 1 1.6461 -0.1413 -2.5117 11 7 3.4271 0.0626 -3.6070 12 6 2.2100 1.9146 -2.6101 13 1 2.5553 2.6163 -1.8653 14 6 1.4499 2.3555 -3.6726 15 7 1.2543 3.6436 -3.8515 16 14 0.6976 1.1231 -4.8577 17 1 1.6481 0.8604 -5.9681 18 1 0.4134 -0.1450 -4.1391 19 1 -0.5667 1.6740 -5.4084 20 1 2.7430 -0.3849 2.1052 21 1 6.3705 -0.0228 0.1246 22 1 5.2450 0.3590 -2.0290 23 1 2.9301 0.1095 -4.4838 24 1 4.2610 0.6302 -3.6332 25 1 1.5823 4.2795 -3.1966 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104451847.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:05 Heat of formation + Delta-G solvation = 59.664270 kcal Electronic energy + Delta-G solvation = -12358.660665 eV Core-core repulsion = 10144.066458 eV Total energy + Delta-G solvation = -2214.594207 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01717 -36.17892 -35.49668 -32.41000 -31.39134 -30.67857 -26.37725 -24.21100 -23.51285 -20.48009 -18.50670 -17.96740 -16.57547 -16.05234 -14.78932 -14.23635 -14.06487 -13.64334 -13.11437 -12.89802 -12.68451 -12.61996 -12.37552 -12.27885 -11.44399 -11.29146 -10.61019 -10.17450 -9.46016 -9.29297 -9.15101 -8.82705 -8.75568 -7.88362 -6.67778 -4.46914 0.97850 1.63411 3.13870 3.16030 3.27943 3.37501 3.42099 4.20420 4.24618 4.33500 4.67366 4.87712 5.09029 5.18309 5.47332 5.73394 5.77112 5.94158 6.30305 6.41054 6.83969 6.91581 7.43537 7.91696 7.95752 8.06048 8.14323 8.20473 8.57813 9.27987 10.65322 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.036511 B = 0.012577 C = 0.010970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.698281 B = 2225.703963 C = 2551.730701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.272 3.728 3 C -0.090 4.090 4 C 0.144 3.856 5 N -0.502 5.502 6 C 0.114 3.886 7 C -0.165 4.165 8 C 0.067 3.933 9 C 0.198 3.802 10 H 0.058 0.942 11 N -0.850 5.850 12 C -0.624 4.624 13 H 0.061 0.939 14 C 0.036 3.964 15 N -0.894 5.894 16 Si 1.041 2.959 17 H -0.277 1.277 18 H -0.275 1.275 19 H -0.282 1.282 20 H 0.158 0.842 21 H 0.156 0.844 22 H 0.143 0.857 23 H 0.327 0.673 24 H 0.333 0.667 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 -7.169 4.237 10.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.044 4.044 3 C -0.096 4.096 4 C -0.017 4.017 5 N -0.211 5.211 6 C -0.041 4.041 7 C -0.186 4.186 8 C 0.056 3.944 9 C 0.088 3.912 10 H 0.075 0.925 11 N -0.381 5.381 12 C -0.664 4.664 13 H 0.079 0.921 14 C -0.171 4.171 15 N -0.526 5.526 16 Si 0.869 3.131 17 H -0.203 1.203 18 H -0.201 1.201 19 H -0.207 1.207 20 H 0.176 0.824 21 H 0.173 0.827 22 H 0.161 0.839 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.746 -8.137 3.979 10.226 hybrid contribution 0.675 1.507 0.237 1.669 sum 5.421 -6.630 4.215 9.545 Atomic orbital electron populations 1.81132 1.11979 1.08989 1.07604 1.25227 0.92300 0.93433 0.93451 1.16924 0.85900 1.10650 0.96135 1.22712 0.89918 0.93146 0.95898 1.67682 1.07423 1.15497 1.30517 1.22877 1.00271 0.93078 0.87901 1.21902 0.94382 1.02657 0.99615 1.20710 0.93596 0.85146 0.94940 1.18616 0.91368 0.96599 0.84579 0.92455 1.59682 1.10646 1.61127 1.06656 1.22499 1.38384 0.91665 1.13815 0.92118 1.25809 0.93917 0.99189 0.98217 1.70799 1.44653 1.01310 1.35869 0.83999 0.77768 0.75209 0.76114 1.20312 1.20120 1.20747 0.82437 0.82650 0.83920 0.85861 0.85494 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.08 18.54 41.84 0.78 -8.30 15 2 C 0.27 5.43 14.07 -22.48 -0.32 5.12 15 3 C -0.09 -1.63 5.74 -106.78 -0.61 -2.25 15 4 C 0.14 2.20 10.92 -17.11 -0.19 2.01 15 5 N -0.50 -7.62 10.34 -12.90 -0.13 -7.75 15 6 C 0.11 1.60 11.17 -17.47 -0.20 1.40 15 7 C -0.17 -2.64 9.34 -39.50 -0.37 -3.01 15 8 C 0.07 1.28 5.06 -103.89 -0.53 0.76 15 9 C 0.20 4.39 2.04 -70.01 -0.14 4.25 15 10 H 0.06 1.38 5.85 -51.93 -0.30 1.08 15 11 N -0.85 -16.75 8.75 -6.65 -0.06 -16.81 15 12 C -0.62 -16.31 9.06 -34.44 -0.31 -16.62 15 13 H 0.06 1.74 7.97 -52.49 -0.42 1.32 15 14 C 0.04 0.99 5.46 -17.82 -0.10 0.89 15 15 N -0.89 -26.32 13.70 55.43 0.76 -25.56 15 16 Si 1.04 24.15 25.54 -169.99 -4.34 19.81 15 17 H -0.28 -5.83 6.93 56.52 0.39 -5.44 15 18 H -0.28 -6.20 6.36 56.52 0.36 -5.84 15 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 20 H 0.16 1.92 8.06 -52.49 -0.42 1.50 15 21 H 0.16 1.61 8.06 -52.49 -0.42 1.18 15 22 H 0.14 2.06 6.49 -52.49 -0.34 1.72 15 23 H 0.33 6.59 5.49 -39.29 -0.22 6.37 15 24 H 0.33 6.07 7.42 -39.29 -0.29 5.77 15 25 H 0.27 8.00 8.72 -40.82 -0.36 7.65 15 LS Contribution 228.21 15.07 3.44 3.44 Total: -1.00 -29.64 228.21 -3.94 -33.58 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -1.62 Total: 9.04 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.76 Total: -7.45 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 1.34 Total: -58.42 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -4.34 Total: 19.81 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.64 -3.94 -33.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104451847.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.246 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds