Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.40061 * 120.56402 * 332.15288 * 3 2 1 5 5 C 1.38354 * 118.28209 * 180.02562 * 4 3 2 6 6 C 1.38348 * 119.31047 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.45206 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47152 * 5.00067 * 7 6 5 9 9 N 1.46896 * 109.46997 * 245.00005 * 7 6 5 10 10 C 1.50701 * 109.47064 * 124.99975 * 7 6 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 N 1.31919 * 121.09403 * 0.27478 * 6 5 4 19 19 C 1.31689 * 121.88614 * 359.43400 * 18 6 5 20 20 H 1.08000 * 120.86192 * 0.02562 * 4 3 2 21 21 H 1.08002 * 120.33874 * 179.97438 * 5 4 3 22 22 H 1.00907 * 110.99811 * 176.04301 * 9 7 6 23 23 H 1.00900 * 111.00550 * 300.00040 * 9 7 6 24 24 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 25 25 H 1.08007 * 119.72406 * 180.29354 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2807 -1.0654 0.5633 5 6 4.6631 -1.0158 0.5381 6 6 5.2913 0.0746 -0.0366 7 6 6.7970 0.1322 -0.0653 8 1 7.2038 -0.8003 0.3259 9 7 7.2600 1.2539 0.7625 10 6 7.2652 0.3283 -1.4843 11 1 6.5446 0.4041 -2.2851 12 6 8.6136 0.4120 -1.7600 13 7 9.4910 0.3202 -0.7847 14 14 9.1939 0.6558 -3.5187 15 1 8.0178 0.7283 -4.4225 16 1 9.9692 1.9188 -3.6135 17 1 10.0560 -0.4855 -3.9181 18 7 4.5942 1.0676 -0.5547 19 6 3.2774 1.0645 -0.5600 20 1 2.7645 -1.9044 1.0060 21 1 5.2457 -1.8197 0.9634 22 1 8.2676 1.2751 0.8118 23 1 6.8961 2.1305 0.4200 24 1 10.4397 0.3787 -0.9787 25 1 2.7416 1.8938 -0.9979 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104453999.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = 38.274177 kcal Electronic energy + Delta-G solvation = -11982.821560 eV Core-core repulsion = 9767.299809 eV Total energy + Delta-G solvation = -2215.521751 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.19801 -37.80551 -36.46676 -33.68704 -33.28449 -31.62322 -28.08938 -25.84966 -24.64924 -22.40787 -19.97324 -18.59319 -17.74199 -17.09299 -16.23981 -15.64501 -15.37578 -15.21489 -14.78297 -14.34807 -14.01239 -13.94971 -13.64767 -13.30115 -12.99015 -12.75875 -12.62510 -11.87500 -11.78453 -10.78111 -10.67051 -10.27562 -9.88564 -9.16026 -8.09045 -6.30052 -0.26981 0.41603 1.39741 1.44117 1.54081 1.57970 2.00195 2.41613 2.80865 3.00323 3.14014 3.58059 3.87522 3.96093 4.27074 4.54161 4.75387 4.85393 5.04958 5.09798 5.48737 5.71301 5.75652 6.09095 6.40246 6.66220 6.93373 7.13417 7.21181 7.43791 8.87020 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.054617 B = 0.008133 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.537256 B = 3441.751228 C = 3675.991120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.295 3.705 3 C -0.109 4.109 4 C -0.009 4.009 5 C -0.177 4.177 6 C 0.185 3.815 7 C 0.245 3.755 8 H 0.037 0.963 9 N -0.839 5.839 10 C -0.545 4.545 11 H 0.047 0.953 12 C 0.023 3.977 13 N -0.915 5.915 14 Si 0.956 3.044 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.279 1.279 18 N -0.497 5.497 19 C 0.151 3.849 20 H 0.176 0.824 21 H 0.156 0.844 22 H 0.348 0.652 23 H 0.321 0.679 24 H 0.267 0.733 25 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 -1.915 1.626 8.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.020 4.020 3 C -0.115 4.115 4 C -0.037 4.037 5 C -0.198 4.198 6 C 0.048 3.952 7 C 0.134 3.866 8 H 0.055 0.945 9 N -0.368 5.368 10 C -0.585 4.585 11 H 0.065 0.935 12 C -0.177 4.177 13 N -0.555 5.555 14 Si 0.782 3.218 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.205 1.205 18 N -0.205 5.205 19 C -0.011 4.011 20 H 0.193 0.807 21 H 0.174 0.826 22 H 0.163 0.837 23 H 0.130 0.870 24 H 0.076 0.924 25 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.214 -1.591 1.915 9.545 hybrid contribution 1.126 -0.171 -1.490 1.875 sum -8.088 -1.762 0.425 8.289 Atomic orbital electron populations 1.81255 1.12677 1.09070 1.10464 1.25322 0.91954 0.92524 0.92245 1.16940 0.84834 1.00201 1.09509 1.21850 0.93027 0.96445 0.92349 1.22121 0.95162 1.00351 1.02143 1.21991 0.97430 0.88703 0.87048 1.17969 0.84649 0.92685 0.91273 0.94465 1.59433 1.16743 1.05860 1.54717 1.21953 0.91966 1.50144 0.94448 0.93511 1.25630 0.96819 0.94484 1.00754 1.69815 1.02097 1.50933 1.32695 0.85548 0.77927 0.77638 0.80674 1.20054 1.20719 1.20523 1.67610 1.07685 1.28247 1.16973 1.23345 0.89325 0.96138 0.92322 0.80693 0.82632 0.83706 0.86965 0.92357 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.08 18.54 19.00 0.35 -12.73 15 2 C 0.29 7.38 15.37 88.33 1.36 8.74 15 3 C -0.11 -2.72 5.74 -21.26 -0.12 -2.85 15 4 C -0.01 -0.22 9.91 22.74 0.23 0.01 15 5 C -0.18 -5.33 9.69 22.32 0.22 -5.11 15 6 C 0.18 7.20 5.69 42.57 0.24 7.44 15 7 C 0.24 11.47 3.02 43.43 0.13 11.60 15 8 H 0.04 1.86 7.86 -2.39 -0.02 1.84 15 9 N -0.84 -38.73 9.18 -174.95 -1.61 -40.33 15 10 C -0.55 -28.27 8.53 25.60 0.22 -28.05 15 11 H 0.05 2.50 7.68 -2.91 -0.02 2.48 15 12 C 0.02 1.20 5.38 84.66 0.46 1.66 15 13 N -0.92 -48.59 11.54 21.45 0.25 -48.35 15 14 Si 0.96 42.04 29.54 68.60 2.03 44.06 15 15 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 18 N -0.50 -18.58 9.87 -182.77 -1.80 -20.39 15 19 C 0.15 4.32 10.92 85.04 0.93 5.25 15 20 H 0.18 2.72 8.06 -2.91 -0.02 2.70 15 21 H 0.16 4.13 7.94 -2.91 -0.02 4.11 15 22 H 0.35 17.22 7.08 -89.69 -0.63 16.59 15 23 H 0.32 14.75 8.91 -89.69 -0.80 13.95 15 24 H 0.27 13.53 8.31 -92.71 -0.77 12.76 15 25 H 0.18 4.07 8.06 -2.91 -0.02 4.05 15 Total: -1.00 -57.53 238.13 2.68 -54.85 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.19 Total: 24.18 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 3.65 Total: -1.30 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -2.81 Total: -121.80 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -57.53 2.68 -54.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104453999.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.127 kcal (2) G-P(sol) polarization free energy of solvation -57.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds