Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39449 * 119.73931 * 267.16417 * 3 2 1 5 5 C 1.38485 * 119.05163 * 180.02562 * 4 3 2 6 6 C 1.38697 * 118.51036 * 359.97438 * 5 4 3 7 7 C 1.38466 * 119.37839 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.54349 * 179.97438 * 7 6 5 9 9 H 1.09009 * 109.47290 * 5.00083 * 8 7 6 10 10 N 1.46902 * 109.47231 * 245.00296 * 8 7 6 11 11 C 1.50702 * 109.47465 * 124.99712 * 8 7 6 12 12 H 1.08002 * 119.99441 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00075 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00481 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99886 * 179.73007 * 13 11 8 16 16 H 1.48494 * 109.47225 * 180.27306 * 15 13 11 17 17 H 1.48506 * 109.46866 * 300.27330 * 15 13 11 18 18 H 1.48498 * 109.47306 * 60.26614 * 15 13 11 19 19 N 1.31582 * 120.91649 * 0.25380 * 7 6 5 20 20 H 1.08000 * 120.47282 * 0.02562 * 4 3 2 21 21 H 1.08005 * 120.74861 * 179.97438 * 5 4 3 22 22 H 1.07994 * 120.31512 * 179.97438 * 6 5 4 23 23 H 1.00902 * 110.99590 * 299.99265 * 10 8 7 24 24 H 1.00896 * 111.00313 * 63.95111 * 10 8 7 25 25 H 0.97005 * 119.99656 * 359.72741 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2598 0.0609 1.2093 5 6 4.6445 0.0612 1.1927 6 6 5.2919 0.0008 -0.0324 7 6 4.5418 -0.0572 -1.1949 8 6 5.2414 -0.1223 -2.5281 9 1 6.3170 -0.2034 -2.3705 10 7 4.9493 1.0964 -3.2945 11 6 4.7538 -1.3258 -3.2930 12 1 4.0113 -1.9779 -2.8574 13 6 5.2557 -1.5941 -4.5488 14 7 6.1595 -0.7997 -5.0794 15 14 4.6568 -3.0901 -5.4938 16 1 5.3505 -3.1576 -6.8050 17 1 4.9517 -4.3189 -4.7139 18 1 3.1921 -2.9831 -5.7136 19 7 3.2267 -0.0506 -1.1520 20 1 2.7232 0.1066 2.1455 21 1 5.2078 0.1075 2.1131 22 1 6.3708 -0.0002 -0.0794 23 1 3.9578 1.1943 -3.4539 24 1 5.3237 1.9120 -2.8333 25 1 6.4702 -0.0227 -4.5889 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104454863.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = 41.582923 kcal Electronic energy + Delta-G solvation = -12117.427148 eV Core-core repulsion = 9902.048874 eV Total energy + Delta-G solvation = -2215.378273 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.37400 -37.87474 -36.68307 -33.65360 -33.42114 -31.67224 -27.78548 -25.91352 -24.95729 -22.49519 -20.17466 -18.96078 -17.27329 -17.05477 -16.35845 -15.96595 -15.68737 -15.46745 -14.78611 -14.36875 -14.24528 -13.88852 -13.67688 -13.49178 -12.95707 -12.61012 -12.38815 -11.90831 -10.93964 -10.77965 -10.64138 -10.42084 -9.93826 -9.26498 -8.34135 -6.17615 -0.37650 0.31832 1.34638 1.56677 1.63552 1.75141 1.82784 2.49475 2.64502 2.92335 3.35944 3.64859 3.95731 4.06419 4.14601 4.25356 4.45903 4.70005 5.00523 5.10779 5.26636 5.61903 5.94681 6.18623 6.24319 6.66059 6.82068 6.92184 7.12146 7.69016 9.04208 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.034330 B = 0.010261 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.417834 B = 2728.214891 C = 3140.978221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.290 3.710 3 C 0.154 3.846 4 C -0.117 4.117 5 C -0.058 4.058 6 C -0.146 4.146 7 C 0.112 3.888 8 C 0.250 3.750 9 H 0.037 0.963 10 N -0.831 5.831 11 C -0.607 4.607 12 H 0.030 0.970 13 C -0.008 4.008 14 N -0.919 5.919 15 Si 1.103 2.897 16 H -0.283 1.283 17 H -0.274 1.274 18 H -0.287 1.287 19 N -0.473 5.473 20 H 0.179 0.821 21 H 0.193 0.807 22 H 0.157 0.843 23 H 0.330 0.670 24 H 0.318 0.682 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 2.300 14.324 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.026 4.026 3 C 0.016 3.984 4 C -0.139 4.139 5 C -0.083 4.083 6 C -0.167 4.167 7 C -0.030 4.030 8 C 0.140 3.860 9 H 0.055 0.945 10 N -0.358 5.358 11 C -0.646 4.646 12 H 0.049 0.951 13 C -0.212 4.212 14 N -0.555 5.555 15 Si 0.928 3.072 16 H -0.209 1.209 17 H -0.199 1.199 18 H -0.213 1.213 19 N -0.184 5.184 20 H 0.196 0.804 21 H 0.210 0.790 22 H 0.174 0.826 23 H 0.142 0.858 24 H 0.130 0.870 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.657 1.130 11.526 11.700 hybrid contribution -0.029 1.179 2.521 2.783 sum -1.686 2.309 14.047 14.336 Atomic orbital electron populations 1.81181 1.12353 1.09299 1.08307 1.25346 0.92032 0.92826 0.92412 1.16722 0.85689 1.04534 0.91473 1.22308 0.95606 0.98363 0.97637 1.22030 0.93413 0.93770 0.99093 1.22621 1.02876 0.98466 0.92717 1.22682 0.88403 0.93125 0.98783 1.18161 0.93472 0.89836 0.84519 0.94483 1.59271 1.19795 1.04119 1.52639 1.21907 1.27335 1.10506 1.04862 0.95115 1.26737 0.94404 1.03641 0.96407 1.70675 1.28144 1.15666 1.41013 0.83105 0.75497 0.73219 0.75391 1.20877 1.19930 1.21325 1.67254 1.11520 1.10852 1.28788 0.80358 0.78980 0.82579 0.85793 0.87001 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.15 18.54 19.00 0.35 -14.80 15 2 C 0.29 9.47 15.53 88.33 1.37 10.84 15 3 C 0.15 4.81 6.58 40.53 0.27 5.08 15 4 C -0.12 -2.43 9.80 22.62 0.22 -2.21 15 5 C -0.06 -1.08 10.17 22.44 0.23 -0.85 15 6 C -0.15 -3.98 9.71 22.43 0.22 -3.76 15 7 C 0.11 4.30 5.67 42.65 0.24 4.54 15 8 C 0.25 11.74 2.54 43.42 0.11 11.85 15 9 H 0.04 1.80 7.74 -2.38 -0.02 1.78 15 10 N -0.83 -37.58 7.78 -174.94 -1.36 -38.94 15 11 C -0.61 -33.70 8.53 25.60 0.22 -33.48 15 12 H 0.03 1.77 7.68 -2.91 -0.02 1.75 15 13 C -0.01 -0.45 5.39 84.65 0.46 0.01 15 14 N -0.92 -55.04 13.51 21.45 0.29 -54.75 15 15 Si 1.10 51.62 29.90 68.60 2.05 53.67 15 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 18 H -0.29 -13.16 7.11 99.48 0.71 -12.46 15 19 N -0.47 -18.70 9.80 -177.34 -1.74 -20.44 15 20 H 0.18 2.24 8.06 -2.91 -0.02 2.21 15 21 H 0.19 1.66 8.06 -2.91 -0.02 1.63 15 22 H 0.16 3.64 7.94 -2.91 -0.02 3.61 15 23 H 0.33 15.48 8.91 -89.69 -0.80 14.68 15 24 H 0.32 12.18 9.06 -89.70 -0.81 11.37 15 25 H 0.28 16.68 6.39 -92.70 -0.59 16.09 15 Total: -1.00 -68.98 238.61 2.73 -66.25 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.19 Total: 17.00 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 3.33 Total: -8.00 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -2.46 Total: -128.93 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.67 kcal Total: -68.98 2.73 -66.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104454863.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.832 kcal (2) G-P(sol) polarization free energy of solvation -68.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds