Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 N 1.32817 * 119.73581 * 245.48694 * 3 2 1 5 5 C 1.31557 * 121.62220 * 179.97438 * 4 3 2 6 6 C 1.38515 * 120.90994 * 0.02562 * 5 4 3 7 7 C 1.38656 * 119.37945 * 359.97438 * 6 5 4 8 8 C 1.38529 * 118.50837 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.47202 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47241 * 145.00742 * 9 8 7 11 11 N 1.46894 * 109.47279 * 25.00308 * 9 8 7 12 12 C 1.50704 * 109.46818 * 265.00032 * 9 8 7 13 13 H 1.08000 * 120.00332 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99791 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00370 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99943 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47350 * 59.99867 * 16 14 12 18 18 H 1.48506 * 109.47248 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47129 * 299.99620 * 16 14 12 20 20 H 1.07999 * 119.54561 * 180.27472 * 5 4 3 21 21 H 1.07999 * 120.30429 * 180.02562 * 6 5 4 22 22 H 1.07997 * 120.74024 * 179.97438 * 7 6 5 23 23 H 1.00897 * 111.00453 * 176.05004 * 11 9 8 24 24 H 1.00902 * 110.99792 * 299.99756 * 11 9 8 25 25 H 0.96991 * 120.00644 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2266 0.4794 1.0493 5 6 4.5414 0.4975 1.0889 6 6 5.2919 0.0148 0.0295 7 6 4.6449 -0.4943 -1.0862 8 6 3.2597 -0.5023 -1.1010 9 6 2.5113 -1.0448 -2.2912 10 1 1.6006 -1.5393 -1.9533 11 7 3.3580 -2.0113 -3.0031 12 6 2.1532 0.0881 -3.2184 13 1 2.4394 1.0996 -2.9707 14 6 1.4603 -0.1669 -4.3828 15 7 1.1114 -1.3986 -4.6842 16 14 1.0171 1.2372 -5.5323 17 1 2.2580 1.9101 -5.9933 18 1 0.2784 0.7028 -6.7046 19 1 0.1619 2.2149 -4.8128 20 1 5.0426 0.8906 1.9612 21 1 6.3709 0.0340 0.0726 22 1 5.2083 -0.8760 -1.9247 23 1 2.8562 -2.4373 -3.7678 24 1 4.2092 -1.5767 -3.3268 25 1 0.6243 -1.5780 -5.5034 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104455306.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = 61.552331 kcal Electronic energy + Delta-G solvation = -12321.600569 eV Core-core repulsion = 10107.088234 eV Total energy + Delta-G solvation = -2214.512335 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 203.075 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.93547 -35.86605 -35.21551 -32.27489 -31.54642 -29.94352 -26.27372 -24.19004 -23.75715 -20.47862 -18.87250 -16.72015 -16.38475 -15.51930 -14.82658 -14.24092 -14.05473 -13.50448 -12.87171 -12.64855 -12.38639 -12.22373 -12.03179 -11.98044 -11.33874 -11.02901 -10.87684 -10.25852 -10.02281 -9.33044 -9.17483 -8.83581 -8.41088 -7.42636 -6.24213 -4.41699 1.10458 1.73079 3.17859 3.23550 3.26694 3.27077 3.44839 4.14006 4.22116 4.48473 4.98468 5.10096 5.29163 5.34738 5.53622 5.73583 6.07806 6.30654 6.57693 6.65140 6.96426 7.34747 7.59547 7.84532 8.05609 8.19816 8.45547 8.71753 8.89839 9.30962 10.75004 Molecular weight = 203.08amu Principal moments of inertia in cm(-1) A = 0.034706 B = 0.011767 C = 0.010548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.587016 B = 2378.988009 C = 2654.004049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.285 3.715 3 C 0.171 3.829 4 N -0.457 5.457 5 C 0.074 3.926 6 C -0.151 4.151 7 C -0.071 4.071 8 C -0.023 4.023 9 C 0.237 3.763 10 H 0.056 0.944 11 N -0.849 5.849 12 C -0.551 4.551 13 H 0.057 0.943 14 C 0.072 3.928 15 N -0.888 5.888 16 Si 0.900 3.100 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.275 1.275 20 H 0.157 0.843 21 H 0.134 0.866 22 H 0.143 0.857 23 H 0.361 0.639 24 H 0.313 0.687 25 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 1.679 5.078 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.032 4.032 3 C 0.034 3.966 4 N -0.167 5.167 5 C -0.086 4.086 6 C -0.171 4.171 7 C -0.097 4.097 8 C -0.028 4.028 9 C 0.127 3.873 10 H 0.073 0.927 11 N -0.379 5.379 12 C -0.591 4.591 13 H 0.075 0.925 14 C -0.132 4.132 15 N -0.526 5.526 16 Si 0.727 3.273 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.200 1.200 20 H 0.174 0.826 21 H 0.152 0.848 22 H 0.161 0.839 23 H 0.178 0.822 24 H 0.123 0.877 25 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.622 1.467 6.340 9.284 hybrid contribution 0.531 1.143 -2.243 2.573 sum 7.153 2.610 4.096 8.647 Atomic orbital electron populations 1.81086 1.11777 1.07495 1.08050 1.24762 0.91660 0.93924 0.92840 1.16204 0.86229 1.02118 0.92077 1.67389 1.10619 1.13581 1.25089 1.22482 0.88518 0.99040 0.98590 1.22312 1.01287 0.98781 0.94737 1.21423 0.93686 0.96503 0.98119 1.21499 0.94525 0.91786 0.94974 1.18042 0.91002 0.90866 0.87422 0.92659 1.59559 1.09047 1.34731 1.34607 1.21606 1.37988 0.94030 1.05439 0.92468 1.24985 0.94338 0.96058 0.97809 1.69706 1.38761 1.18761 1.25418 0.86518 0.78802 0.82094 0.79913 1.19986 1.20947 1.19993 0.82594 0.84792 0.83888 0.82216 0.87718 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.47 18.54 41.83 0.78 -8.69 15 2 C 0.29 6.31 14.10 -22.47 -0.32 6.00 15 3 C 0.17 3.46 6.58 -85.07 -0.56 2.90 15 4 N -0.46 -8.14 10.28 -11.16 -0.11 -8.26 15 5 C 0.07 1.03 11.18 -17.57 -0.20 0.84 15 6 C -0.15 -1.97 10.11 -39.33 -0.40 -2.37 15 7 C -0.07 -1.16 9.37 -39.32 -0.37 -1.53 15 8 C -0.02 -0.46 5.04 -104.08 -0.52 -0.98 15 9 C 0.24 5.61 2.47 -70.02 -0.17 5.44 15 10 H 0.06 1.49 7.29 -51.93 -0.38 1.11 15 11 N -0.85 -18.54 8.80 -6.65 -0.06 -18.60 15 12 C -0.55 -14.25 8.71 -34.44 -0.30 -14.55 15 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 14 C 0.07 1.89 5.38 -17.82 -0.10 1.79 15 15 N -0.89 -23.87 11.54 55.43 0.64 -23.23 15 16 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 17 H -0.27 -6.18 7.11 56.52 0.40 -5.77 15 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 20 H 0.16 1.55 8.06 -52.49 -0.42 1.13 15 21 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 22 H 0.14 2.14 6.41 -52.49 -0.34 1.80 15 23 H 0.36 8.61 7.08 -39.29 -0.28 8.33 15 24 H 0.31 6.22 7.27 -39.29 -0.29 5.93 15 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 LS Contribution 233.17 15.07 3.51 3.51 Total: -1.00 -28.27 233.17 -4.86 -33.13 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -1.67 Total: 8.90 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.93 Total: -2.47 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 1.24 Total: -58.78 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.27 -4.86 -33.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104455306.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.683 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds